PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG024408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 178aa MW: 19975.9 Da PI: 9.8465 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.6 | 1.3e-24 | 113 | 156 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCs++vl+++k+C++H+hrgr+rsrk +e+ CCG024408.1 113 HEPGRCRRTDGKKWRCSKEVLPDQKYCDKHIHRGRQRSRKLVEA 156 69**************************************9985 PP | |||||||
2 | QLQ | 40.9 | 6.4e-15 | 40 | 74 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Ql++L+ Q l+yKy+ a+ PvP +L+++i+k CCG024408.1 40 FTILQLHELELQSLIYKYIQAGFPVPYHLVLPIWK 74 7888******************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-4 | 38 | 74 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.234 | 39 | 74 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.0E-11 | 40 | 73 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.097 | 112 | 156 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.0E-21 | 114 | 155 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MEGNRRDGRS RSPSIGLGVE LGRGGSCQRL ITGCEKPYGF TILQLHELEL QSLIYKYIQA 60 GFPVPYHLVL PIWKSVTTAL GGLSSSLYQL YPSFMGCKCN NPLYMEYKNG TEHEPGRCRR 120 TDGKKWRCSK EVLPDQKYCD KHIHRGRQRS RKLVEAASHS NTSTNLSISL PGIGSTRA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029122.1 | 1e-130 | PREDICTED: growth-regulating factor 10-like | ||||
Swissprot | Q6AWX7 | 8e-40 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | B9GKS4 | 1e-116 | B9GKS4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s08310.1 | 1e-117 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37740.1 | 5e-31 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|