PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023915.1 | ||||||||
Common Name | DREB4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 452aa MW: 50784.5 Da PI: 5.8434 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.6e-18 | 67 | 125 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p++ + ++ r +lg+f ta eAa a++ a+k l+g CCG023915.1 67 CRYRGVRQRT-WGKWVAEIREPVNKCslmnRQgSRLWLGTFSTAIEAACAYDYAAKLLYG 125 78*****999.**********877556754336***********************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.50E-27 | 67 | 134 | No hit | No description |
Pfam | PF00847 | 2.8E-11 | 67 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.445 | 68 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-32 | 68 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-28 | 68 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-19 | 68 | 134 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-9 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MEDSLRQCSL LGFSSEDRKR RRNGCESIED TLARWKKHNK LQVSKVPGKG SKKGCMKGKG 60 GPENMNCRYR GVRQRTWGKW VAEIREPVNK CSLMNRQGSR LWLGTFSTAI EAACAYDYAA 120 KLLYGPNAIL NFPDYPVESG DHLDNMSSSI TATETSSTES RTALGNYEDN KVDKLKMNHC 180 GSREGNNQSG FSRICAVDES EEEVEKLRVA ESSARELKAV EWNLTDEWKS SHHIEAEAPV 240 LREEMDGELA GILRSWSCYG INNRYGFLQN ETEKVRHKKL KNEVVESRMS TILNECVDSD 300 YDMRTDHKPI YDVEKPLMRE AAAGEEFSGL KFSSYNPFET THDHMNPGLC NQGIDIKPFI 360 QDISHNSVSK GGGNYGYDPR KVGSADHLQN GRPSGLSSQL QTPSTNLPGS LSYFQEADIG 420 LGWNFDPSQQ EFNGGLVGEP GLLDQWYPEL QF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 69 | 133 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 21 | RKRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ919705 | 0.0 | FJ919705.1 Populus euphratica dehydration responsive element binding protein (DREB4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011019066.1 | 0.0 | PREDICTED: uncharacterized protein LOC105121905 isoform X1 | ||||
TrEMBL | C4PE64 | 0.0 | C4PE64_POPEU; Dehydration responsive element binding protein | ||||
STRING | POPTR_0006s10510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17110 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 3e-21 | ERF family protein |