PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023425.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 493aa    MW: 53964.8 Da    PI: 8.0627
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023425.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-17157206155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  CCG023425.3 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206
                  78*******************......55************************997 PP
2AP2422.3e-13249299155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  CCG023425.3 249 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 299
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-9157206IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-16157216IPR016177DNA-binding domain
SMARTSM003805.3E-33158220IPR001471AP2/ERF domain
PROSITE profilePS5103217.794158214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-17158215IPR001471AP2/ERF domain
CDDcd000181.12E-11158216No hitNo description
PfamPF008475.4E-9249299IPR001471AP2/ERF domain
CDDcd000181.57E-25249309No hitNo description
SuperFamilySSF541711.31E-16249308IPR016177DNA-binding domain
PROSITE profilePS5103215.514250307IPR001471AP2/ERF domain
SMARTSM003801.7E-31250313IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15250307IPR001471AP2/ERF domain
PRINTSPR003675.3E-6251262IPR001471AP2/ERF domain
PRINTSPR003675.3E-6289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MLDLNLTAGS GDSSTTAKNN NKMKILELSN SPMESSGSFN SSSIVNADGC GDEDSCSNGD  60
VFALNFSILS NESSSKKTVY SNNNDHDDRG DRTIQLFPLD CGPKNVGGES NSSSMVQMQP  120
VDLGGSRNYG GPPEQEIGAR QQKPVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNVSDYDE DIKQMSGFTK EEFVHTLRRQ  240
STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY DKAAIKCNGR  300
EAVTNFEPSK YEGEILSEPS SGDGSQNLNL NLGIAPPDTS DSLKVNTNMG GFYFHSGWDG  360
VSTDRAPKFL NSVSATMKNQ LPNGPGVTSV HPPMWDGINH RIFPIYEERA IEKRMEVDSF  420
PNWTRQIQGP YGGGANPLPL FSTAASSGFA SSAIMAPSAA AGQLHYPSSA ILHHRFSPPI  480
TNPSNISQFY CRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048415.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotB8B8J21e-104AP23_ORYSI; APETALA2-like protein 3
SwissprotQ8H4431e-104AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2K1XCT20.0A0A2K1XCT2_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-99related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]