PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022355.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 518aa    MW: 57040.2 Da    PI: 8.1427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022355.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05145166223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C  Cgk+F++  +L  H+r H
  CCG022355.1 145 TCCLCGKVFPSMNSLFGHMRFH 166
                  6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.0E-96892IPR007087Zinc finger, C2H2
SMARTSM003555.66890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7876895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM003550.088144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432144166IPR007087Zinc finger, C2H2
SuperFamilySSF576673.21E-9145166No hitNo description
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
PfamPF139121.1E-4146167IPR007087Zinc finger, C2H2
SuperFamilySSF576673.21E-9431458No hitNo description
PfamPF139122.6E-13436460IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827436458IPR007087Zinc finger, C2H2
SMARTSM003550.032436458IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280438458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDDHEREFFQ GDHYPAKVTA GKPVASQPLD PLASKSKFCF KIKIANSGKP SGDDRGGSGA  60
DLHGPGYRVC EYCGKEFSSG KAWGGHKRHH LKNDKDLKKA KKLELTKIQR EKMKKHELKL  120
SKSNASRCNT IKAGDVSVAS GGKPTCCLCG KVFPSMNSLF GHMRFHPDRG WKGTQPPSFS  180
DKHSSSSSLS ESAAGLEVDQ IDLAMEKGLD DGVDLLASLS SWNKRDKRGR TLDPFESVCD  240
LDKVVAACNL IELSRDGTGQ LEKQKIEEIR QSKKLKINDE SATYKSFQPK NSGKPMDDQK  300
AVAFDSEGGV SCWFNEEKGK TKRESDEQDD ESHSMITKKK KKKKMMMMNW MCKLNDSETS  360
KGTGSYKIGC RSYDKAFPTF YAPGHVPPGL ASADSAEQLD YNSNMDVKGH VLSSTEVKQS  420
EEIEEEGSVP MGIYFFQCDI CHKTFPTGQA LGGHKRCHWK GPVKATPTHE VALLGEASQN  480
TSNTESSGEA NQAGEPTRAS ACRLSFDLNM PYIMEDGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337343KKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007811.10.0PREDICTED: uncharacterized protein LOC105113357
TrEMBLA0A2K2C1Y60.0A0A2K2C1Y6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-14C2H2 family protein