PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021939.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 319aa    MW: 35440.9 Da    PI: 9.4348
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021939.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30163222159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ ++++ pr+Y++C++a gCpvkkkv+rsaedp++++ tYegeHnh 
  CCG021939.2 163 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApGCPVKKKVQRSAEDPSILVATYEGEHNHA 222
                  58***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.704158224IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-29158222IPR003657WRKY domain
SuperFamilySSF1182902.48E-25161222IPR003657WRKY domain
SMARTSM007746.9E-36163223IPR003657WRKY domain
PfamPF031064.3E-25164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDSSWVNTSL DLNINPFKHV NEITQVQKIK KFEGYSTRVE QKLQVKNEDG VGVLVEELTR  60
ISSENKKLTE MLGVVCDNYM GLQKHLADLV SKNSAKELVT PISSRKRKAE SEDYSIVING  120
ISGGNAESSS IDEESSKRPK ENLKSKISRT YFRTCESDAS LVVKDGYQWR KYGQKVTRDN  180
PSPRAYFKCS FAPGCPVKKK VQRSAEDPSI LVATYEGEHN HASHSQHEPS LGSSHGSNFG  240
PIPTQSPIRS SAPTVTLDLI QSGRHGDRAT KTVQEMEVPA LQKILVQQMA SSLTRDPNFT  300
AALAAAISGR FNQNRIEKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-211622211674Probable WRKY transcription factor 4
2lex_A3e-211622211674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036673.10.0PREDICTED: probable WRKY transcription factor 40 isoform X1
TrEMBLU5FH190.0U5FH19_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-88WRKY DNA-binding protein 40