PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021655.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 463aa    MW: 52243.8 Da    PI: 7.3259
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021655.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12289334454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+r+N++f  Lr+++P+       K++ a+ L  Av YIk+L
  CCG021655.1 289 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDRASLLADAVTYIKEL 334
                  799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-4424196IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.18E-17283349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-14284338No hitNo description
PROSITE profilePS5088817.028285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16289349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10289334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-15291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDEILSPSSP SSLISFTQET SSTLQKRLQF FLYSRPEWWV YSIFWQASKD ASGRPVLSWG  60
DGHFRGNKKY ASKDSNKQNH PKFGFNIERK SLFTEDTDMD RLVDGDVAEW YYTVSVTRVF  120
AVGDGILGRA FTSGSSIWLT GDPELQIYEC ERVTEARMHG IQTFVCVSTP SGVLELGSPV  180
FISEDWSLVQ LAKSIFGAEI NANPVPKQSN HESQPQIPNC NVSNLLDIGL FSSPQTERTS  240
SLENKKEVFG QGRSSSDSGR SDSDAGFRED HIEFKKRGRK PGGKESPLNH VEAERQRRER  300
LNHRFYALRS VVPNVSKMDR ASLLADAVTY IKELKRRVNE LEANLQVVSK KSKISSCANI  360
YDNQSTSTMV NHIRPPPNYM SNNAVEVDVK ILGSDGLIRV QSPDINYPAA RLMDTLRELE  420
FPIHHLSVTR VKELVLQDAV IRIDDGLVTE EAMRAAIFQR MQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-24231968192Transcription factor MYC3
4rqw_B1e-24231968192Transcription factor MYC3
4rs9_A1e-24231968192Transcription factor MYC3
4yz6_A1e-24231968192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299RQRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2835861e-104GU283586.1 Populus balsamifera isolate KUU07 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835871e-104GU283587.1 Populus balsamifera isolate KUU07 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835891e-104GU283589.1 Populus balsamifera isolate FBK13 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835911e-104GU283591.1 Populus balsamifera isolate GAL12 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835921e-104GU283592.1 Populus balsamifera isolate STO11 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835931e-104GU283593.1 Populus balsamifera isolate STO11 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835941e-104GU283594.1 Populus balsamifera isolate RNA13 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835961e-104GU283596.1 Populus balsamifera isolate MGR10 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835981e-104GU283598.1 Populus balsamifera isolate POR11 haplotype A basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2836011e-104GU283601.1 Populus balsamifera isolate NWL07 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022409.10.0PREDICTED: transcription factor MYC2-like
TrEMBLB9GY360.0B9GY36_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-60bHLH family protein