PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 202aa MW: 22467.8 Da PI: 10.3076 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.7 | 4.2e-23 | 135 | 178 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCs+++l+ +k+C rH+hrgr+rsrk e CCG021329.1 135 DPEPWRCRRTDGKKWRCSKEALPYQKYCVRHIHRGRQRSRKLEE 178 79**************************************9754 PP | |||||||
2 | QLQ | 35.8 | 2.4e-13 | 66 | 100 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a+ PvP +L+++i++ CCG021329.1 66 FTVLQLQELQLQFLIYKYIQAGFPVPYHLVLPIWR 100 8888*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.9E-4 | 64 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.498 | 65 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.2E-11 | 66 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.074 | 135 | 179 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-19 | 136 | 176 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MESQAPPSKF ARLSNSRTRL ASGWNVERNR RGDGESGSPP LGLGLELGRG GSSQRPIISC 60 KKPYGFTVLQ LQELQLQFLI YKYIQAGFPV PYHLVLPIWR SVAASLGGLS SRLYELYPSL 120 MGCNPLYLAC KNGMDPEPWR CRRTDGKKWR CSKEALPYQK YCVRHIHRGR QRSRKLEESA 180 SHGNSSTDLS ISLPAGISGA SA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033852.1 | 1e-146 | PREDICTED: growth-regulating factor 10-like | ||||
Swissprot | Q6AWX7 | 1e-38 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | U5GJ98 | 1e-116 | U5GJ98_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s11800.1 | 1e-117 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 5e-26 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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