PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021234.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 297aa MW: 32492.4 Da PI: 8.9587

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021234.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F++ L H +H CCG021234.1 116 YQCKICNRRFPSFQALGGHKASH 138 9***********99998888877 PP
2	zf-C2H2	12.8	0.00035	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H CCG021234.1 196 HECSICGDEFSSGQALGGHMRRH 218 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.4E-12	115	140	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.37E-8	116	138	No hit	No description
PROSITE profile	PS50157	11.448	116	143	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	116	138	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	118	138	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.37E-8	191	218	No hit	No description
Pfam	PF13912	7.0E-12	195	220	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.99	196	223	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	196	218	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	198	218	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGSQAMVSKE LSQIIKGKRA KRQRPSSPLT LAITCSSSSV GENGGERGQR IYNNSSSSDP 60 STSVKFTGRT DEEEDMANCL ILLAQGNRQN CKLSKPVNTA ATTITYTNKD AGLYAYQCKI 120 CNRRFPSFQA LGGHKASHKK SRPGNINEDK KALARTVRMG DQEEIGTDTD MTTNLSLQIV 180 NDGVLCSNNV KSNKVHECSI CGDEFSSGQA LGGHMRRHRA FAPTSTATAT TATLTSIRLE 240 RSKPDHESKE SKKPRDIQLL DLNLPAAEDD LRESKFHFAS KEQVLVFTAS SLVDCHY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004487.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	B9IFU2	1e-178	B9IFU2_POPTR; Uncharacterized protein
STRING	POPTR_0016s10790.1	1e-179	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	3e-54	C2H2 family protein