PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020861.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 364aa    MW: 39347.7 Da    PI: 6.314
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020861.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.8e-28185245259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqKe+ gs+fpr+YYrCt +   +Cp+kk+v+r ++dp  +e++Y+geH+++
  CCG020861.1 185 EDGFSWRKYGQKEILGSRFPRAYYRCTNQnlyHCPAKKQVQRLDDDPFRLEVVYRGEHTCH 245
                  7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26179246IPR003657WRKY domain
SuperFamilySSF1182907.72E-25182246IPR003657WRKY domain
SMARTSM007746.5E-37184246IPR003657WRKY domain
PfamPF031061.9E-25185245IPR003657WRKY domain
PROSITE profilePS5081119.807185247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDDTISLILH GCKLAKDLES NLANSASQPE TLSRLCEEII RVFANARERL HVHQLGTTLY  60
PHPMLFREPQ DSQQQQNIDP ILQEWRGTSC TSAMGTLFHQ TQGVMAERSA LGLTESKIGG  120
GIQVGSGGLA IESGSRSDVQ AVDASDSGRG SSSSSKRPRI RNDDAEKRTV RVPAQQFGNT  180
EIPPEDGFSW RKYGQKEILG SRFPRAYYRC TNQNLYHCPA KKQVQRLDDD PFRLEVVYRG  240
EHTCHMSATA PSAPPPAPGI TQEMAQTMIG QPPSAATSLG RWVEFRLGPG GGAGSTSSSS  300
MAAGSGGCAA GPSTTGRYGK EADYPVTDMA DAMFNSGSSS TNSMELIFPS ISEEKWDQPS  360
DKNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18185244968OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179320.0JN117932.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001383.10.0PREDICTED: WRKY transcription factor 55
TrEMBLG8GB850.0G8GB85_9ROSI; WRKY transcription factor
STRINGPOPTR_0019s08730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-54WRKY DNA-binding protein 55