PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 26512.1 Da PI: 9.1112 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 6.8e-19 | 7 | 52 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll+++v ++G+++W+ Iar ++ gR++k+c++rw + CCG019780.1 7 KGPWSPEEDALLKHLVIKHGPRSWTMIARAVP-GRSGKSCRLRWCNQ 52 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.6e-16 | 61 | 102 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T eEd ++++a+ ++G++ W++Iar + gRt++ +k++w++ CCG019780.1 61 AFTREEDVIIINAHIKYGNK-WAAIARLLD-GRTDNAIKNHWNS 102 79******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.162 | 2 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-30 | 4 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-16 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-17 | 7 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-24 | 8 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.02E-16 | 9 | 51 | No hit | No description |
SMART | SM00717 | 1.3E-13 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.487 | 59 | 108 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-13 | 61 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.78E-12 | 61 | 104 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 61 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDSNRVKGPW SPEEDALLKH LVIKHGPRSW TMIARAVPGR SGKSCRLRWC NQLSPVVEHR 60 AFTREEDVII INAHIKYGNK WAAIARLLDG RTDNAIKNHW NSKLKRKYAD FVVHGGMVNE 120 DGVKDKSAKT VSSSSVLERA NTPSGSEVSD AGLPGTSSLL VQENVPVVES GISNKADVST 180 ELTLSVPGMK SGQLGRDHGE GNNGLLTGDA EKTMTFGPEL FAVMQEMISK EVRDYMVGMG 240 GKSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-36 | 6 | 107 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-36 | 6 | 107 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-36 | 6 | 107 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030396.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 9e-63 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | B9GHS7 | 1e-172 | B9GHS7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s30750.1 | 1e-173 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-65 | myb domain protein 73 |
Publications ? help Back to Top | |||
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