PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018986.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 364aa    MW: 41056.6 Da    PI: 6.6661
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018986.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.55.6e-28129190159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+e+ +v+e+tY+g+H+++
  CCG018986.1 129 LDDGHSWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRSDENHSVFEVTYRGRHTCN 190
                  59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.895124187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-27124191IPR003657WRKY domain
SuperFamilySSF1182903.27E-25128191IPR003657WRKY domain
SMARTSM007745.3E-41129191IPR003657WRKY domain
PfamPF031064.1E-26130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGKSMEWEQK TLVSELAQGK ELAKQLRNHL NPSSSLEARQ FLVEKILFSY EKALSVLNRG  60
ALVADQPKPT IGIMEAPHSF SNSTSPWSEV SDQDCKKEWN KDVNKKRKTQ SRRTEQVKVC  120
PGTGLEGPLD DGHSWRKYGQ KDILGANFPR GYYRCTHRHS QGCLATKQVQ RSDENHSVFE  180
VTYRGRHTCN QVSTPPVASP SLENGFSKRS KYHCQQQHEE KPKPSKEISR YFGLDCNQVK  240
NEDLGSKDGI FPFFSFPCTS SGNENEENNI FTESMIENSF FGSFSPTFIS PTTSESNYFS  300
VSPCHMNSFG IGSQNVQTQG CELTTEKISA PTSVTNSPIR DLDISIDYVD FDTTFPFDNP  360
EFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18129189868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023206.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLB9GQZ60.0B9GQZ6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-51WRKY DNA-binding protein 46