PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016335.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 212aa MW: 24664 Da PI: 9.3991

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016335.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72	5.1e-23	28	74	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k++e +snr+vtfskR+ng++KKA ELS+LC+ae avi+fs++ kl+ CCG016335.1 28 KKVEKESNRYVTFSKRKNGLFKKATELSTLCGAETAVIVFSEHRKLF 74 57899*************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.259	20	80	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-29	20	79	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.08E-33	21	89	No hit	No description
SuperFamily	SSF55455	5.62E-27	21	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-20	22	42	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-23	29	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-20	42	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-20	57	78	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MDATDLNRQR HQQETRRTSK GRQKIEIKKV EKESNRYVTF SKRKNGLFKK ATELSTLCGA 60 ETAVIVFSEH RKLFSCGQPD VDKVLDRYLA EIERVPNNFP PITNNNIERQ LANKQEYARS 120 LKRLEDEQTV AKMIGNMNNM NEGGFWWDLP IDNMEQDELE AYKESMEQLK KNVITRLGLI 180 EANNAPSGSR IVNPFINMKE IPSLSFNNHR FQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	5e-18	21	90	1	70	Myocyte-specific enhancer factor 2A
3mu6_B	5e-18	21	90	1	70	Myocyte-specific enhancer factor 2A
3mu6_C	5e-18	21	90	1	70	Myocyte-specific enhancer factor 2A
3mu6_D	5e-18	21	90	1	70	Myocyte-specific enhancer factor 2A
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004765.1	1e-158	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A3N7G457	1e-146	A0A3N7G457_POPTR; Uncharacterized protein
STRING	POPTR_0016s12640.1	1e-147	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	4e-32	AGAMOUS-like 61