PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015526.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 298aa    MW: 32842.8 Da    PI: 7.677
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015526.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.9e-17230264135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  CCG015526.1 230 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 264
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.596224260IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-14224278IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15225288No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13228262IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.98E-11229276No hitNo description
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
PfamPF003205.9E-15230264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDFCRNVTVS TEYHQQEKVV ASPPPCSKLG AAAAASALTA TTSPLDDPFS AQNTEVDFSS  60
EWLSVFVEDC LSSTGNCLPA PTVEAQKPNT EENPPKNWQR KPQDQEDPSS LKKLVIPGKS  120
RSKRRRLLGD KTRNPLTSWC YTNQAFNNLT SSDPPLLQQT YWLADSELIM PIKEDSNNTG  180
MDNEVQEESG VAVHDEDRGK VVAAVVGSNG SKDSLGVLES NNGQQQPRRC THCLAQRTPQ  240
WRAGPLGPKT LCNACGVRYK SGRLLPEYRP AKSPTFVSYL HSNSHKKVME MRMAGFNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034353.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLA0A2K1Y1N90.0A0A2K1Y1N9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-35GATA transcription factor 4