PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015230.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 498aa    MW: 54567.6 Da    PI: 7.0714
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015230.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.6e-16164213155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+ +++a+ k++g
  CCG015230.1 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARVYDRAAIKFRG 213
                  78*******************......55************************997 PP
2AP2422.3e-13256306155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  CCG015230.1 256 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 306
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-15164222IPR016177DNA-binding domain
PfamPF008471.5E-7164213IPR001471AP2/ERF domain
CDDcd000182.99E-23165223No hitNo description
Gene3DG3DSA:3.30.730.107.5E-16165221IPR001471AP2/ERF domain
PROSITE profilePS5103217.293165221IPR001471AP2/ERF domain
SMARTSM003808.9E-32165227IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16256315IPR016177DNA-binding domain
CDDcd000182.04E-25256316No hitNo description
PfamPF008475.5E-9256306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15257314IPR001471AP2/ERF domain
PROSITE profilePS5103215.514257314IPR001471AP2/ERF domain
SMARTSM003801.5E-31257320IPR001471AP2/ERF domain
PRINTSPR003675.4E-6258269IPR001471AP2/ERF domain
PRINTSPR003675.4E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MMLDLNLSAV SGDSSTTGKN NKHKQKKILE LSNSPMESSG SFDSSSIVNA DGYGDEDSCS  60
NGDLFAYNFS ILSNEISVKK TVDCDNNNND GGGGGNCGDR TIQLFPVACG IKNVGGESQS  120
SSTMQMQWSG LGDCGDQGSP SEHGIVAQQK PVKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARVYDRAAIK FRGVDADINF NVTDYDEDIK QMRNFTKEEF  240
VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE IEAARAYDKA  300
AIKCNGREAV TNFEPSTYEG EMLSEPHSGD GKQNLDLNLG IAPPDTSDAL MVNSNMGGFY  360
FQSDWDGLST DRAPKILNSA SATMKNQQPN GPGMTFVHPL TWDGVNHHIF PIYEERAIEK  420
RMEVDSFPNW TRQIQGPYGG GANPLPLFST AASSGFASSA IMAPSAAAGQ LQFPSSTILH  480
RFPPITNPST ISQFYCRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004148.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotQ8H4431e-107AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A385JI360.0A0A385JI36_POPTO; Target of early activation tagged 1
TrEMBLB9MT780.0B9MT78_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-106related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]