PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014012.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 521aa    MW: 56790.3 Da    PI: 5.6691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014012.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.5e-053583951254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  CCG014012.1 358 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 395
                  677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-5356400No hitNo description
SuperFamilySSF474592.09E-11356410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8360403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAEEFQAGIC GENWWMNSSK SVFMGGLSPC STVSIASDHM ETYGSWTTAD MVDLKARSIS  60
CKESNHITTS VSDTSIPFLN SQKPQQADSD SGGSSILIDS TLQMMGYGLS SSSSSSSDWN  120
PAFLPGNGRT ESYNSMMQEE MNSAGLNSSQ IQKDWSPKSY TSTAEDFSLD QRRLNPVNSS  180
GNSPPTCQGF STGFSMEPSA SYGYPSTLIQ SLFEPEHPQP QQAQSLFNNR FMNYLSPTAP  240
NYGTNMTELS SPSWPKVSPL IKSSLPKQQP STLHFTNNTP YWNASPTRIN DIRANLLPPS  300
QSQFLVPAFE EKSNCSNLTT KPSKEVRDSV SVVKKGSEPA FKRPRIETPS PLPTFKVRKE  360
KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVS VLSTPYMKNG NPIHHQQAPA  420
DKLNDLEGPK QDLRSRGLCL VPVPSTFPVA NETTADFWTP TFGGTFSFSS SSSCFGYAVL  480
LLCFLFPPVN GVPASLQWLR GGSVGTSGAA GGAEEEDGLW R
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472300.0EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003379.10.0PREDICTED: transcription factor bHLH112 isoform X1
TrEMBLA0A2K2AP170.0A0A2K2AP17_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.17e-56bHLH family protein