PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG013826.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | EIL | ||||||||
Protein Properties | Length: 662aa MW: 75079.5 Da PI: 5.1883 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 518.8 | 2.3e-158 | 47 | 427 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 +el++rmw+d+mll+rlke++k+ e+ ++++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWkek CCG013826.1 47 DELERRMWRDRMLLRRLKEQSKN----TEV-VDNAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRGWWKEK 139 79*******************98....566.999**************************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.---- CS EIN3 99 vefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppyk 196 v+fdrngpaaiskyqa+++i+++++++ + s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtG+e+ww+++gl+kdqg+ppyk CCG013826.1 140 VRFDRNGPAAISKYQADHAIPGKREDCGP-AASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPTGNEEWWPQQGLPKDQGPPPYK 236 ************************99977.89****************************************************************** PP -GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX..XXXXXXXXXXXXXXXXXXXX.XXXXXX CS EIN3 197 kphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss..slrkqspkvtlsceqkedve.gkkesk 291 kphdlkkawkvsvLtavikh+sp+i++ir+l+ qsk+lqdkm+akes+++l+++nqee++ ++++++s + +s ++++s+++++dve +++e++ CCG013826.1 237 KPHDLKKAWKVSVLTAVIKHLSPDIAKIRKLVCQSKCLQDKMTAKESATWLAIINQEEALSRKLYPDSCipMSAGGSGSFIISDSSDYDVEgVDDEPN 334 *******************************************************************65546667****************6677777 PP .XXXXXXXXXX................................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS EIN3 292 ikhvqavktta................................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354 +v+ +k + ++++++krk++ +e+ ++ +++v + c+ q+++++++++f d ++++++++ CCG013826.1 335 -VEVEDCKPLDvnlfnmataaaprdrfmmppgapqikgehvetNMSFIQKRKQPAGEPHMMVDQKV-YRCEYPQCPYNDSRIGFLDVTARNNHQM 427 .66888888778**************************************************9986.**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 1.1E-130 | 47 | 294 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 2.9E-75 | 169 | 304 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 2.48E-61 | 173 | 297 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MGIYEEMEFC NNLDFFSAPP GEMDVVPERE PEATIEEDYS DEEMDVDELE RRMWRDRMLL 60 RRLKEQSKNT EVVDNAKQRQ SQEQARRKKM SRAQDGILKY MLKMMEVCKA QGFVYGIIPE 120 KGKPVSGASD NLRGWWKEKV RFDRNGPAAI SKYQADHAIP GKREDCGPAA STPHTLQELQ 180 DTTLGSLLSA LMQHCDPPQR RFPLEKGVAP PWWPTGNEEW WPQQGLPKDQ GPPPYKKPHD 240 LKKAWKVSVL TAVIKHLSPD IAKIRKLVCQ SKCLQDKMTA KESATWLAII NQEEALSRKL 300 YPDSCIPMSA GGSGSFIISD SSDYDVEGVD DEPNVEVEDC KPLDVNLFNM ATAAAPRDRF 360 MMPPGAPQIK GEHVETNMSF IQKRKQPAGE PHMMVDQKVY RCEYPQCPYN DSRIGFLDVT 420 ARNNHQMNCS YRTNTSQGFG MSNFQINSDK PAVFSLPFPQ TKAAAPNQTP SFNVSGLGLP 480 EDGKKSISDL MSFYDTNLQR DKNMNPGSAN VVGDQTQQQL QEQKFQFHLD RRNVSFMGDQ 540 NLLQQQQQQK FQFQLDSRNA NVVGGQNQHQ QQKFQFQVDD SFYGQGAIMG NNITEVTSMP 600 VNNSAFPSTE IEFDHCKAFD SAFDANVNDN VVDFRFGSPF TMPPVEYSMD PMPKQDAGMW 660 YV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 7e-81 | 171 | 304 | 1 | 134 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 7e-81 | 171 | 304 | 1 | 134 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT627407 | 0.0 | KT627407.1 Populus x jrtyschensis isolate 20F-pj73-1-1 EIN3-like family protein (EIN3) gene, partial cds. | |||
GenBank | KT627409 | 0.0 | KT627409.1 Populus x jrtyschensis isolate 20F-pj73-1 EIN3-like family protein (EIN3) gene, partial cds. | |||
GenBank | KT627411 | 0.0 | KT627411.1 Populus x jrtyschensis isolate 20F-pj80-1 EIN3-like family protein (EIN3) gene, partial cds. | |||
GenBank | KT627413 | 0.0 | KT627413.1 Populus x jrtyschensis isolate 20F-pj81-1-1 EIN3-like family protein (EIN3) gene, partial cds. | |||
GenBank | KT627415 | 0.0 | KT627415.1 Populus x jrtyschensis isolate 20F-pj81-1 EIN3-like family protein (EIN3) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032978.1 | 0.0 | PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2K1Z9U5 | 0.0 | A0A2K1Z9U5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s01200.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF322 | 34 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |