PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG013447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 285aa MW: 31439.6 Da PI: 7.0222 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.3 | 4.6e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+ql+++l +k CCG013447.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEERLRDPVYGCVGLISILQHRLKQLQNDLYCAK 104 7********************************************************************************************99988 PP DUF260 99 ee 100 +e CCG013447.1 105 KE 106 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.455 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-42 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFASVH KVFGASNVAK LLNELNAAQR 60 EDAVNSLAYE AEERLRDPVY GCVGLISILQ HRLKQLQNDL YCAKKELANY IGPQAMLPMV 120 MQTQHMGNPS SSTVMQHSVM PMMGIPSVGQ MGMRAEAHQH QNHHVHPQQL YEAQQLAAVV 180 AAREQEILRA YEQQHHQQEI VRFNGGLEPA NSVAATGYHQ INPSAAAAAM PPSLALGTFD 240 NTFQIQTQGE PHPNQLQAQV LLQPQQIQQH PKSESEEGRS GGPSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-49 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-49 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039214.1 | 0.0 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Refseq | XP_011039215.1 | 0.0 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Swissprot | Q9FKZ3 | 5e-84 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2K1ZNY2 | 0.0 | A0A2K1ZNY2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-84 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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