PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG013171.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 1094aa    MW: 125523 Da    PI: 7.0126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG013171.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.6e-33224281260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  CCG013171.1 224 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 281
                  8****************************************.***************85 PP
2WRKY104.75.1e-33384442159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+++d ++v++tYeg+Hnh+
  CCG013171.1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERASQDLRAVITTYEGKHNHD 442
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-27213281IPR003657WRKY domain
SuperFamilySSF1182908.37E-25216281IPR003657WRKY domain
PROSITE profilePS5081122.469218282IPR003657WRKY domain
SMARTSM007741.3E-36223281IPR003657WRKY domain
PfamPF031062.8E-25224280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36369444IPR003657WRKY domain
SuperFamilySSF1182901.31E-28376444IPR003657WRKY domain
PROSITE profilePS5081138.4379444IPR003657WRKY domain
SMARTSM007741.1E-38384443IPR003657WRKY domain
PfamPF031063.0E-25385442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MTSSSSPSSF TNLLSSNNKD MDSLGWGLYE HGTNDRIGIE IPNYKSFQPF SPPPVSPSSY  60
FAIPPGLSPT ELLDSPVLFP TSNGLASPTT GAFAGQTFNW RGNSNDNQQG VSGEEKNYSD  120
FSFPTQTRPP AISSSFFQSS SSSVTVEKSL KRKQEEWNFD QLKQTDFSSD QKTGVKSEFA  180
PEQSFSSELV PLQANMQSVN TAAQPSFNQY NQSAHYMREN KKSDDGYNWR KYGQKQVKGS  240
ENPRSYYKCT YPNCPTKKKV ERSLDGQITE IVYKGSHNHP KLQSSRRSSS QLVQPSGGAS  300
SEITDQSVAP IESSMMQEDS SISLGEDEFD QSSSMNSGEE DNANEPDAKR WQGQNENESI  360
LGAGSRTVRE PRIVVQTTSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSVGCPVRKH  420
VERASQDLRA VITTYEGKHN HDVPAARGSG YMNKAPSIAS STANAPIPIR PSVMANHSNQ  480
TSYPNSLHST RSLPASGSQA PFTLEMLQSX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  660
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  720
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  780
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  840
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  900
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  960
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  1020
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXDTD  1080
SWAVKKTGRM ELGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36224445878Probable WRKY transcription factor 4
2lex_A4e-36224445878Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774370.0GQ377437.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 17 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-116WRKY DNA-binding protein 33