PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012505.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 739aa    MW: 84041.4 Da    PI: 9.6261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012505.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07533572345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +W+ eE el+ + ++++G++ Wkt a+ +g  + + ++k+ w+
      CCG012505.1 533 SWSLEEYELIRKFHEKHGSD-WKTLAEALG--KHRFHVKDTWR 572
                      7*******************.********9..56777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.2457528IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5460547IPR009057Homeodomain-like
PROSITE profilePS500906.783526575IPR017877Myb-like domain
SMARTSM007171.6530577IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-8530585IPR009057Homeodomain-like
PfamPF139218.9E-11534592No hitNo description
Gene3DG3DSA:1.10.10.604.9E-7548585IPR009057Homeodomain-like
PROSITE profilePS500907.561576644IPR017877Myb-like domain
SMARTSM007171.4580646IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-7586644IPR009057Homeodomain-like
SuperFamilySSF466892.5E-5624706IPR009057Homeodomain-like
PROSITE profilePS500907.039646699IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MVGRKQREKK KTKDEDGSLK EESSLKDRLL ASGGESLTPS IEIMKKKRRR SEKHEAGAED  60
VGVSSSLSER NVDVNNAADN NERKKKKEKK KKKSERHGDC SEVVAVSSSL SEGNVDVNNA  120
AEKNEKKKKK SKRHEACVED DAVGLSEGNI DVNNARGGNE KKERKRKLEH GNNEKESQVA  180
RKKNKVSEVG EVLEETHVRM EDNMGLQKNV HVDLVRNSES EVRRDRKKNR KEKSREDRSS  240
TVASVVNILD DNRREQVVGV QKGPESEGIA NMNNGEGQDR KKEKKKKRKY GGGGEVIERA  300
ADGKDAGREE STEIVQDKVD SSKKEKKKKK KRHNVVQEAA SIQIMAKTMG DQSSVIESDG  360
GNSSSIKNKA RDGKLKVSDE GGSKRKKKAK SLGNGSKEKS SKRVTQTEKD VETTGPSEKS  420
SLKATSKRVS FCEDVEVFPT SDGPSDEKAV GEDGLVRGKR FSHEEDEMVK EAVLNYIDVH  480
GLGAEGLNMV LNCKKHPAIV QCWKEIGAAL PWRPRQSVYH RAHILFERDQ NSSWSLEEYE  540
LIRKFHEKHG SDWKTLAEAL GKHRFHVKDT WRRIKLINMK KGKWSQDEYQ SLFDFVNLDL  600
RLKAFEERKT KHGMLRDNIS WTAISEKLET RTDALCCQKW YDQLTSPMVA EGKWLDTDDY  660
RLLMELYDLD ACCMEDVDWD NLLEHRSGDI CRKRWNQMVK HLGDHRNESF TDQVDVLIKR  720
YCPNVLEARE AYNSKPAVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449KKKRRR
28287RKKKKE
38288RKKKKEK
4160167KKERKRKL
5283288KKKKRK
6322330KKEKKKKKK
7325331KKKKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024023.10.0PREDICTED: DNA-binding protein REB1-like
TrEMBLA0A2K1XKK60.0A0A2K1XKK6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-133MYB_related family protein