PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012036.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21984 Da    PI: 9.7824
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012036.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.45.8e-211563149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 krien+  r +tfskRr gi KKA+EL +LC+aevav++fs+ gk + +
  CCG012036.1 15 KRIENEDDRLITFSKRRSGIYKKASELVTLCGAEVAVLVFSPAGKAFSF 63
                 79******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-29766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.679767IPR002100Transcription factor, MADS-box
CDDcd002653.31E-31876No hitNo description
SuperFamilySSF554552.62E-26880IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-20929IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-202944IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-204465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEGKQTRGRQ KIAIKRIENE DDRLITFSKR RSGIYKKASE LVTLCGAEVA VLVFSPAGKA  60
FSFGHPSIES VANRFLGQNI APNDKTQPLV EAHRKVRINE LNQQHNELLS EVEAERDRGK  120
LLKEGKSEKS SQGWWEVPID ELSLQELKQM NVMLEEFHKN LYKKINELRR NGGASSSSFQ  180
AHTGHATNIP FCQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A5e-145841499PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B5e-145841499PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015022.11e-142PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2K2ATX51e-135A0A2K2ATX5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s13590.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-39AGAMOUS-like 61