PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 465aa MW: 51826.5 Da PI: 8.5406 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl CCG010908.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ CCG010908.1 67 RGTFSQQEEKLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-28 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.116 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.75E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.958 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.60E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MGRHPCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEEKLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQGG 120 IDPVTHKPLS EVENGEDKNP PASGTKDKAS AVSNTELNLL KADNSKSSGA NLQEKRSSPI 180 SPNGYQLERR STSSSKVLNG NGNNTNDHVN NNLMTPASNK DFFLDRFTAS HHQGSTSNCQ 240 PSDFVGHFPL QQLNYASNAR LATNSIPSLW LSQSSKAFDM NSEFSSTVIP SILPPAVTSS 300 FHSTSMSYKP SITVSPDNPS LSSFTTNSCR LWETGNSRSN SNSNTVSNGS AELQSNSSFF 360 ENTIFSWGLG ECGSAEKEAQ NHLMGSQHED IKWPEYLQNP LFMAAALQNQ NQQSLYNEIK 420 SETQVVTENS SGMWPHNQQQ QQQPLQNPDI CPRDIQRITA SYGYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLRQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970784 | 0.0 | AB970784.1 Populus nigra PniMYB055 mRNA for MYB transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040042.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | A0A385JIM0 | 0.0 | A0A385JIM0_POPTO; Myb domain protein 55 | ||||
TrEMBL | B9I997 | 0.0 | B9I997_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s10680.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 4e-99 | myb domain protein 61 |