PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG010857.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 378aa MW: 43440.5 Da PI: 6.3732 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.2 | 5.7e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+++yL+kkv+ ++++l +vi++vd++k+ePwd+++++k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s CCG010857.1 15 VPPGFRFHPTEEELLHFYLRKKVSFERIDL-DVIRDVDLNKLEPWDIQERCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYS- 110 69****************************.9***************964444122455**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ +g++ktLvfykgrap+g+k+dW+mheyrl CCG010857.1 111 TGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-58 | 9 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.488 | 15 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MTENMSISVN GQSQVPPGFR FHPTEEELLH FYLRKKVSFE RIDLDVIRDV DLNKLEPWDI 60 QERCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS TGKRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDSTSDT SVIKQVSNVM EEEAAQEEGW VVCRIFKKKN 180 LNKTLDTPFS SSPISADTRN QMLSSCDEDT IDQTFHYMGR TCKEENVADN SARYLNYVHH 240 DGFMKLPSLE SPNSISSQNC YQPMITESEG SITNQMSCPL DPGLDNWATL DRLFAYQLNG 300 QTETSRQLSC FPIDPTMTYC TPTDLHHDLR LPNLRSSFPL PSNRSYHGTQ DYNNEIDLWN 360 FTTRSSPDTL CHLSNTGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-49 | 9 | 180 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB599940 | 0.0 | AB599940.1 Populus trichocarpa PtVNS09 mRNA for transcription factor, complete cds. | |||
GenBank | HQ215849 | 0.0 | HQ215849.1 Populus trichocarpa wood-associated NAC domain transcription factor 2A (WND2A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039206.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like isoform X1 | ||||
Swissprot | Q84WP6 | 1e-144 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2I4KKT5 | 0.0 | A0A2I4KKT5_POPTR; NAC family protein | ||||
STRING | POPTR_0014s10060.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-135 | NAC family protein |