PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010310.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 247aa    MW: 27266.1 Da    PI: 8.4935
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010310.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.5e-193782147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v+q+G+++W++I+r++  gR++k+c++rw + 
      CCG010310.1 37 KGPWSAEEDRILTRLVEQHGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82
                     79*****************************9.***********985 PP
2Myb_DNA-binding53.55.5e-1791133347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
      CCG010310.1  91 PFSPVEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 133
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.6773287IPR017930Myb domain
SuperFamilySSF466893.95E-3135130IPR009057Homeodomain-like
SMARTSM007173.2E-173685IPR001005SANT/Myb domain
PfamPF002493.4E-183782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-253890IPR009057Homeodomain-like
CDDcd001672.43E-153981No hitNo description
SMARTSM007171.3E-1488136IPR001005SANT/Myb domain
PROSITE profilePS5129419.19889138IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2291137IPR009057Homeodomain-like
PfamPF002495.1E-1491133IPR001005SANT/Myb domain
CDDcd001676.10E-1191134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEAGNMCSTS SSDSSSSDSS FNGNKTPRSA NKSERIKGPW SAEEDRILTR LVEQHGPRNW  60
SLISRYIKGR SGKSCRLRWC NQLSPNVEHR PFSPVEDETI LAAHARFGNR WATIARLLPG  120
RTDNAVKNHW NSTLKRRARE RQSQMNLEGN LYSNYGNHNE GNAIDINVAS GSMPDTIMRE  180
EEDALTTLTL APPGIGGGGS GNSGGMVAER RPESLPAGFW DVMRDVIARE VRDYVSSNLS  240
ESSSGFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40341381105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030579.10.0PREDICTED: transcription factor MYB44-like
TrEMBLB9MVK31e-145B9MVK3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13030.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-59myb domain protein 73