PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009830.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 377aa MW: 41212.8 Da PI: 8.9017

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009830.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	259	312	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+v +Ltl+hvkSHLQ+YR+ CCG009830.1 259 PRMRWTSSLHSRFVHAVELLGGHERATPKSVLELMDVRDLTLAHVKSHLQMYRT 312 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.23E-15	256	313	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-28	257	313	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-24	259	312	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-7	260	311	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MSQKGIFDKQ SLNLIPDLSL HISLPNSAPS SICTGTNDGD SAFDIWRKDD VLIKSRSDSS 60 IRVGSQISDT ELSLANPTST AALEAESPWR INYGGRGTGS LEDHHHDQAR QRNLLLQRSS 120 NGQMSHINHG ISVLDVTGSK PIKGIPVYNS WNSSGDHNID PRFSFNQMPY SPSCTPYSSS 180 NSSADHHTST LQAYRMGTSA PRLNGMSMES LRVPQYHQYH QYGAAAGVGG GGAELYGSSG 240 MIRSRFMPKL HSKRNMRAPR MRWTSSLHSR FVHAVELLGG HERATPKSVL ELMDVRDLTL 300 AHVKSHLQMY RTVKSTDCRP TASSDGSGDE DFVSGTACIA QNANYLLNQK GGSKVLNLQH 360 DNGCPNSPTT LWSNSSR

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MSQKGIFDKQ SLNLIPDLSL HISLPNSAPS SICTGTNDGD SAFDIWRKDD VLIKSRSDSS  60
IRVGSQISDT ELSLANPTST AALEAESPWR INYGGRGTGS LEDHHHDQAR QRNLLLQRSS  120
NGQMSHINHG ISVLDVTGSK PIKGIPVYNS WNSSGDHNID PRFSFNQMPY SPSCTPYSSS  180
NSSADHHTST LQAYRMGTSA PRLNGMSMES LRVPQYHQYH QYGAAAGVGG GGAELYGSSG  240
MIRSRFMPKL HSKRNMRAPR MRWTSSLHSR FVHAVELLGG HERATPKSVL ELMDVRDLTL  300
AHVKSHLQMY RTVKSTDCRP TASSDGSGDE DFVSGTACIA QNANYLLNQK GGSKVLNLQH  360
DNGCPNSPTT LWSNSSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-17	260	314	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	260	314	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	260	314	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	260	314	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047796.1	0.0	PREDICTED: transcription repressor KAN1-like
TrEMBL	A0A2K1XH99	0.0	A0A2K1XH99_POPTR; Uncharacterized protein
STRING	POPTR_0015s05340.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1756	33	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	4e-52	G2-like family protein