PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG009371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 566aa MW: 64690 Da PI: 6.9149 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 80 | 3.4e-25 | 421 | 491 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W+k+ev aLi++r+++e ++++ lk+plWeevs m++ g++rs+k+Ckekwen+nk+++k +e+ k++ CCG009371.1 421 KWPKDEVEALIQVRSRIEIKFQEPGLKGPLWEEVSFLMSSMGYQRSAKRCKEKWENINKYFRKARESPKRG 491 7*****************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.12 | 414 | 478 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.8E-17 | 420 | 490 | No hit | No description |
CDD | cd12203 | 3.85E-24 | 420 | 485 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MQPSYGLPNI DHHHHQQQQR QQHLMEDDYS CSPSVLPISN LQNLNYPYQP HLHHHLQQQH 60 KHPHQVLLQQ HHQLFYPFQQ QQQVQGQSQD QVNPSLFSVN FKWGRDYEDS GYKKAGALNN 120 QEEAASTTTN TTTFLDGNVH SNPPHPILMP HSWHPREDST TIKEPFWKQL NKQLSGNEEK 180 EINESKTSYF SPLDMEQVVD GSSEGCKNLE SKFPLFNELQ AIYSLAQIAE ANQTGSGSVL 240 TCDNSPTNAG LSIPCNASNG QNVGACGAAN NVIGVDRGSE NSIGEEASLR KCRRRKRKGK 300 LKEKLNYIAG FFENSVKKVM NHQEMLHRKF LEVIEKMDKE RAEREATWRR QEAEKYSREA 360 ISLAHERASA SSREAQIISY IEKITGQSIN LTRMAPPLLQ PEISNEPIKE ITPTKTDSHS 420 KWPKDEVEAL IQVRSRIEIK FQEPGLKGPL WEEVSFLMSS MGYQRSAKRC KEKWENINKY 480 FRKARESPKR GGIEFGTKKQ GYTELFEVFS VRRDYLANVR NPLGVSVISS DMGSSRSEFD 540 GFSDQNTELE EGSSEQDIEA YKDDKQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 289 | 297 | RKCRRRKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011019357.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like | ||||
TrEMBL | B9HD13 | 0.0 | B9HD13_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s23800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13998 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 7e-37 | Trihelix family protein |