PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009019.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 586aa    MW: 65293.3 Da    PI: 4.4846
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009019.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53171432128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  ppGfrFhPtdeelv +yLkkk+ +k+++l ++i+e+d+yk++P++Lp +  +k+++++wyfFs+rd+ky++g r+nrat++gyWkatgkd+ v++ ++
  CCG009019.1  17 PPGFRFHPTDEELVLYYLKKKICKKRTKL-NIIRELDVYKWDPEELPgQsILKTGDRQWYFFSPRDRKYPNGARSNRATRQGYWKATGKDRIVVC-NS 112
                  8*************************999.99**************96446788999**************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kktLvfy+grap+g++tdWvmhey+l
  CCG009019.1 113 RNVGVKKTLVFYRGRAPSGQRTDWVMHEYTL 143
                  9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-619166IPR003441NAC domain
PROSITE profilePS5100555.91216166IPR003441NAC domain
PfamPF023652.5E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MKVTADSCLG ADQTAWPPGF RFHPTDEELV LYYLKKKICK KRTKLNIIRE LDVYKWDPEE  60
LPGQSILKTG DRQWYFFSPR DRKYPNGARS NRATRQGYWK ATGKDRIVVC NSRNVGVKKT  120
LVFYRGRAPS GQRTDWVMHE YTLDEEELNR CPNVQDYYAL YKVFKKSGPG PKNGEQYGAP  180
FKEEDWADDE NPCVNSLVTP EIPVEQHNEV SLVDNVRVSA QLEPPLNDFE DIILQIVEEP  240
ARNHLQNNDF TYLLPQVASE GEAQSTLVDP SFREVVSEPA GVLTTSGQHY NEHTSFNFNQ  300
SATSTLQLNE ASEVTSAPQL NEEDFLEIDD LIGPEPSFSN TEQPAENLQF DDFDGLSEFD  360
LYHDAAMFLR DIGPVDQEAV SCSYVSSYGC DMVNQASYQL QTNSITNPVD YQLQPNLVAN  420
QVDYELQPQF FDVEQMNNQL WVHDHQNNAL ATSESHHGIL SQSTGAVCES SNNSTGANGN  480
QGSKEGDAAN GWLSSALWGF VESIPTTPAS ASENPLVNKA FERMSSFSRI RMNVKNINVD  540
AGNGAASVRS TGGNKGFVLL SIIGVLCAIM WVLVGGAKVL GRSISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-501317217174NAC domain-containing protein 19
3swm_B6e-501317217174NAC domain-containing protein 19
3swm_C6e-501317217174NAC domain-containing protein 19
3swm_D6e-501317217174NAC domain-containing protein 19
3swp_A6e-501317217174NAC domain-containing protein 19
3swp_B6e-501317217174NAC domain-containing protein 19
3swp_C6e-501317217174NAC domain-containing protein 19
3swp_D6e-501317217174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044813.10.0PREDICTED: NAC domain-containing protein 69 isoform X1
TrEMBLA0A2K2AJE60.0A0A2K2AJE6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s22180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-155NAC domain containing protein 17