PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008917.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 436aa MW: 47690.8 Da PI: 7.9549

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008917.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.3e-32	249	302	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ CCG008917.1 249 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRT 302 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-15	246	303	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	247	303	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-24	249	302	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-7	250	301	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MSQKGIFDKQ SLNLIPDLSL HISLPNSAPS SICTGTNDSD SAFDFWRKDD GLKSHSDSSI 60 RVGSQADTEL SLANPTNTAL EAESPWRRNF CGSGTGSVEG HHDQARQRNL LLQCSGNGQM 120 SHLNHGISVL DVTGLKPIKG IPVYNSWNSS GDIDPRFSFN RMPYSPSCTP YSSSNPSADH 180 HKSPFQAYRM DTSAPRFNGM SMDTLRAPQY HQYGAAGVGS GPGAEVYGSG MIRSRFMPKL 240 QNKRNMRAPR MRWTSSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL SHVKSHLQMY 300 RTVKSTDCRP AASSDGSGDE DSMPGTACFN QNANYLLKQK GGSNVPNLQH DNGFSHSPAT 360 LWSNSSSKGG GWHNSSRDLD GLKGEALSSQ QVTGNKLDGV GFAQSRSFTG FNQELKNPIL 420 EISLGRPEYW QNEEHE

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MSQKGIFDKQ SLNLIPDLSL HISLPNSAPS SICTGTNDSD SAFDFWRKDD GLKSHSDSSI  60
RVGSQADTEL SLANPTNTAL EAESPWRRNF CGSGTGSVEG HHDQARQRNL LLQCSGNGQM  120
SHLNHGISVL DVTGLKPIKG IPVYNSWNSS GDIDPRFSFN RMPYSPSCTP YSSSNPSADH  180
HKSPFQAYRM DTSAPRFNGM SMDTLRAPQY HQYGAAGVGS GPGAEVYGSG MIRSRFMPKL  240
QNKRNMRAPR MRWTSSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL SHVKSHLQMY  300
RTVKSTDCRP AASSDGSGDE DSMPGTACFN QNANYLLKQK GGSNVPNLQH DNGFSHSPAT  360
LWSNSSSKGG GWHNSSRDLD GLKGEALSSQ QVTGNKLDGV GFAQSRSFTG FNQELKNPIL  420
EISLGRPEYW QNEEHE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	250	304	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	250	304	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	250	304	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	250	304	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000707.1	0.0	PREDICTED: transcription repressor KAN1-like
TrEMBL	A0A2K1Y8N8	0.0	A0A2K1Y8N8_POPTR; Uncharacterized protein
STRING	POPTR_0012s03900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1756	33	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	8e-51	G2-like family protein