PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008667.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 191aa    MW: 21832.5 Da    PI: 9.2855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008667.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d+++++G g+W++ ++  g+ R++k+c++rw++yl
      CCG008667.1 13 KGAWSQQEDQKLIDYIQKHGEGCWRSLPQAAGLLRCGKSCRLRWRNYL 60
                     79******************************99*************7 PP
2Myb_DNA-binding48.91.5e-1568110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
      CCG008667.1  68 GFGEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                      5789****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-24462IPR009057Homeodomain-like
PROSITE profilePS5129416.686860IPR017930Myb domain
SuperFamilySSF466891.27E-2811107IPR009057Homeodomain-like
SMARTSM007174.1E-141262IPR001005SANT/Myb domain
PfamPF002497.0E-171360IPR001005SANT/Myb domain
CDDcd001676.22E-111560No hitNo description
PROSITE profilePS5129423.24461115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-2463115IPR009057Homeodomain-like
SMARTSM007172.5E-1465113IPR001005SANT/Myb domain
PfamPF002493.6E-1469110IPR001005SANT/Myb domain
CDDcd001672.01E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MRKPCCDKQH TNKGAWSQQE DQKLIDYIQK HGEGCWRSLP QAAGLLRCGK SCRLRWRNYL  60
RPDLKRDGFG EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IKKKLESSHR  120
NIGFTRLRAE ISSAARSKSQ ANDPETFLDV NNQVFDSNSG KPEPSNKVSS DINLDLTLSI  180
PSKKLESSDE N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29131177110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000470.11e-140PREDICTED: myb-related protein 308-like
RefseqXP_011000471.11e-140PREDICTED: myb-related protein 308-like
RefseqXP_011012518.11e-140PREDICTED: myb-related protein 308-like
RefseqXP_011012519.11e-140PREDICTED: myb-related protein 308-like
SwissprotP813931e-69MYB08_ANTMA; Myb-related protein 308
TrEMBLB9IEA01e-126B9IEA0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s04300.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-70myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]