PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006207.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 231aa    MW: 25069.1 Da    PI: 9.5934
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006207.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-202877255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++GVr ++ +gr++AeIrdps+   + r++lg+f+taeeAa+a+++a+++++g
  CCG006207.1 28 HFRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDNAAREFRG 77
                 69*******.**********965...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-132877IPR001471AP2/ERF domain
CDDcd000181.16E-332886No hitNo description
PROSITE profilePS5103223.7362885IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-222886IPR016177DNA-binding domain
SMARTSM003802.3E-402891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-322885IPR001471AP2/ERF domain
PRINTSPR003674.7E-112940IPR001471AP2/ERF domain
PRINTSPR003674.7E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAPREKTAAV KASGGGVGGG GGGGKEVHFR GVRKRPWGRY AAEIRDPSKK SRVWLGTFDT  60
AEEAARAYDN AAREFRGSKA KTNFPYPSCE NVKKNVLSID NNKKAASKNI SGGGNNQSPS  120
QSSTVEFCSS DAPLDLNLGP AVSTVRLPFQ PMVMNQQQVV YFDALMKSEY RRMVFDHGYH  180
HHPNLPVVFS CGGVLSDSDS SSVVDLNHHD VKTPRRSVDL DLNLPPPPEI A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-222885260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-221886473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027786.11e-172PREDICTED: ethylene-responsive transcription factor 4
TrEMBLA0A2K1YG081e-99A0A2K1YG08_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04720.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-28erf domain protein 9