PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005965.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 293aa    MW: 32755.1 Da    PI: 6.5901
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005965.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd llv+++++ G  +W++ +++ g+ R++k+c++rw +yl
      CCG005965.1 14 KGPWTAEEDYLLVQYIQKNGFVSWHSLPKKAGLFRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.21.1e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+++ E+  +++++  lG++ W+ Ia+ ++ gRt++++k++w+++l
      CCG005965.1  67 RGRFSPAEEATIIHLHGILGNR-WAHIASQLP-GRTDNEIKNFWNSHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.591961IPR017930Myb domain
SuperFamilySSF466891.14E-2711108IPR009057Homeodomain-like
SMARTSM007177.7E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-131461IPR001005SANT/Myb domain
CDDcd001673.68E-101661No hitNo description
PROSITE profilePS5129424.62462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2565116IPR009057Homeodomain-like
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002492.2E-1367112IPR001005SANT/Myb domain
CDDcd001674.59E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRGPCCDQD GVKKGPWTAE EDYLLVQYIQ KNGFVSWHSL PKKAGLFRCG KSCRLRWTNY  60
LRPDIKRGRF SPAEEATIIH LHGILGNRWA HIASQLPGRT DNEIKNFWNS HLKKRLASIG  120
PKLQINQSSN PINIMCESPY CHMVQWESAR VEEARLSMQS LLVKHTSTVK GHPDIFIQLW  180
NSEVGEAFRN IKGKDVETCE SLVSDAHPCV NIEPVLLDDT APATPNKTST SIDTTQEQED  240
TCKPSADVMS ISDSIGSNEF ADSSDTALKL LLDFPGGNGM ELIRENLLGF RCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048715.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9M2D93e-86MYB17_ARATH; Transcription factor MYB17
TrEMBLB9ID770.0B9ID77_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-88myb domain protein 17