PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005265.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 679aa    MW: 77994.6 Da    PI: 7.6064
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005265.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.24.1e-2163156190
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                  +fY+e+Ak++GFs+r ++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k +     +w+vt ++++HnHel 
  CCG005265.1  63 EFYSEFAKRCGFSIRHHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNENKPQRNRKSSRCGCQAYMRISKVTelgAPEWRVTGFDNHHNHELL 156
                  6**************998887735666799****************999*********************998887889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1763156IPR004330FAR1 DNA binding domain
PfamPF105511.2E-18279370IPR018289MULE transposase domain
PROSITE profilePS509669.755557590IPR007527Zinc finger, SWIM-type
PfamPF044344.4E-7561588IPR007527Zinc finger, SWIM-type
SMARTSM005758.7E-6565592IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MMSEEAGQML VVYDDPSDQR SLSLDDTSST EESPDETRLS LETPNDAIPY IGQRFSTHDE  60
GYEFYSEFAK RCGFSIRHHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTSN ENKPQRNRKS  120
SRCGCQAYMR ISKVTELGAP EWRVTGFDNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEDESV DLLRMCRNIK  240
EKDPNFKFEY TLDSDNRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DLPLGIWVGM  300
NNYGMPCFFG CVISREENLR SLSWALKAFL GFMNGKAPQT ILTDQNMCLK DAIAKEMPST  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVNIFGLHTN  420
RHVANLHALR NLWALPYLRS HFFAGMTAAG HSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQAAEQQ TMQQNLQNIS LKTGAPMESH AATVLTPYAF SKLQEQLVLA AHYASFQMED  540
GFHVRHHTKD EGGRKVYWVP REGIISCSCN QFEFSGILCR HALRVLSTGN CFQIPERYLP  600
LRWRRINTSS AKLLHSSNDH GERIQLLQSM VSSLITESAK SKERLDIATE QVSILLSRIR  660
DQPVPSQGIR DFTSIHRKL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028383.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_011028384.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLB9N0G80.0B9N0G8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]