PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005184.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 404aa    MW: 45148.9 Da    PI: 8.1293
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005184.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07231253123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ Cgk F+r  nL+ H+r H
  CCG005184.1 231 HYCQVCGKGFKRDANLRMHMRAH 253
                  68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-6229257No hitNo description
Gene3DG3DSA:3.30.160.601.6E-6231257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034231253IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653231258IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
SMARTSM0035590288321IPR015880Zinc finger, C2H2-like
SMARTSM0035522326348IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MISGDSSCFP GGSSQGFHMY QAVTEDVVSS TREASSSSET HSNSLLCNLS LLKDKVHQVE  60
SLISILIAPD HSQPEDKSTS VALANMSTMI QEIIVAASSV MFTCQQMGIG NDISGNNINT  120
DDLHQPRGCK AEESSLLSQP NFGGHHAGNI GEERGQSFFS PESFNWCSDN YNDNCNTNEN  180
IRGIHVSSNN RVDIRREILS QGGEGILQGQ SPKNYDIIEL DAADLLAKYT HYCQVCGKGF  240
KRDANLRMHM RAHGDEYKTT AALSNPMKNN PTATPENKEA SMKLPRKYSC PHEGCRWNRK  300
HAKFQPLKSM ICVKNHYKRS HCPKMYVCKR CNRKQFSVLS DLRTHEKHCG DLKWLCSCGT  360
TFSRKDKLMG HVALFFGHTP AISGLTRPKK FENQAMQMHL DHDR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028270.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLU5GGZ90.0U5GGZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-104C2H2 family protein