PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004564.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 463aa MW: 51101.8 Da PI: 6.0763

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004564.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.4e-12	259	305	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR+++N ++ Lr l+P++ K++ a+++ A++YIk+L CCG004564.1 259 TKHFATERQRREHLNGKYTALRNLVPNP-----SKNDRASVVGDAINYIKEL 305 68***********************9.....7**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.9E-15	254	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.186	256	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.95E-12	257	310	No hit	No description
Pfam	PF00010	3.7E-10	259	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-12	259	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.6E-11	262	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MYEETACFET NNSIVEGGND DGFCQVSPFM TGSSTTSSFE ESLKLSMEEL SNHYHQEESA 60 AAAASMEEIQ LQHHMAFNNN CHHLMEQYPT NHHQVLSYDH PSNWDPNTIQ FQEMHQVLDQ 120 NGNFNATANT PSSLPPDLLN LFNLPRCTST STMLPNSSIS FTNPANKTPS GFMGVDSTSV 180 LFDSNPLAPQ FRELVHSLPP HGYGLPAPLF GGGQGGDHVD GLSGGGLSYQ DGGHGDGVFE 240 FTAEMACIGK GIRKSGKVTK HFATERQRRE HLNGKYTALR NLVPNPSKND RASVVGDAIN 300 YIKELLRTVE ELKLLVEKRR NGRERIKRRK TEEDGGVDVL ENSNTKVEQD QSRYNNGSLR 360 SSWLQRKSKH TEVDVRLIED EVTIKLVQRK KVNCLLSVSK VLDELQLDLH HAAGGLIGDY 420 YSFLFNTKIN EGSCVYASGI ANKLLEVVDG QHASSTSVPA GSC

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MYEETACFET NNSIVEGGND DGFCQVSPFM TGSSTTSSFE ESLKLSMEEL SNHYHQEESA  60
AAAASMEEIQ LQHHMAFNNN CHHLMEQYPT NHHQVLSYDH PSNWDPNTIQ FQEMHQVLDQ  120
NGNFNATANT PSSLPPDLLN LFNLPRCTST STMLPNSSIS FTNPANKTPS GFMGVDSTSV  180
LFDSNPLAPQ FRELVHSLPP HGYGLPAPLF GGGQGGDHVD GLSGGGLSYQ DGGHGDGVFE  240
FTAEMACIGK GIRKSGKVTK HFATERQRRE HLNGKYTALR NLVPNPSKND RASVVGDAIN  300
YIKELLRTVE ELKLLVEKRR NGRERIKRRK TEEDGGVDVL ENSNTKVEQD QSRYNNGSLR  360
SSWLQRKSKH TEVDVRLIED EVTIKLVQRK KVNCLLSVSK VLDELQLDLH HAAGGLIGDY  420
YSFLFNTKIN EGSCVYASGI ANKLLEVVDG QHASSTSVPA GSC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011046432.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A2K2A576	0.0	A0A2K2A576_POPTR; Uncharacterized protein
STRING	POPTR_0006s21660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3743	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	1e-71	bHLH family protein