PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004179.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 352aa MW: 40110.3 Da PI: 6.9404 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.5 | 8.9e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp ++k +ekewyfF+ d+ky+tg r+nrat++gyWkatgkdke+++ ++ CCG004179.1 16 LPPGFRFHPTDEELITHYLSQKVLDNYFCA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVIDRKYPTGLRTNRATDAGYWKATGKDKEIYR-AKT 111 79*************************988.89***************888999****************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgekt+Wvmheyrle CCG004179.1 112 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 *****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-63 | 9 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.504 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MENNFMYSEE DEQMELPPGF RFHPTDEELI THYLSQKVLD NYFCARAIGE VDLNKCEPWD 60 LPWRAKMGEK EWYFFCVIDR KYPTGLRTNR ATDAGYWKAT GKDKEIYRAK TLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKTPVYNP HKTAKNDWVI CRIFEKSCGG KKTHISGLVR 180 LSSCGNELKP SILPPLMDPS QHKNDKRTNV GDKSHVTCFS NPTEDQKPHE TIADCFNISF 240 GAPSSSSNMS PSSVLFSKSS PPNSFYSSQI LPNIANFQSP ESVMMPEHSM LRILLENHGP 300 GMNLNSKREL SEDTGLSTDM SSVVTNHELV HRPFEDPSSS AGPVDLDYLW NY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035791.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-132 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2K1X569 | 0.0 | A0A2K1X569_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s12210.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-131 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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