PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003176.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18205.5 Da    PI: 8.0355
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003176.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.8e-162271149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevaviifsstgklyey 49
                 k+ie+ks   vtf+kRrng++KKA+E S L  da+ a+i++s++++ y +
  CCG003176.1 22 KKIESKSSLIVTFCKRRNGLFKKASEFSNLYdDANLAIIVLSPNQRPYSF 71
                 68****************************736***********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.2781475IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-201474IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-201590IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-101636IPR002100Transcription factor, MADS-box
PfamPF003194.7E-192371IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-103651IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MQETEVNTTR RWGTGRKKVE MKKIESKSSL IVTFCKRRNG LFKKASEFSN LYDDANLAII  60
VLSPNQRPYS FGHPDVNTVV DQYLGDQESS ERNNMDCGNI NEEGEACWWE RSVEDMDFKE  120
LEKFKASLET LKNNVAMKVQ EKRRTRVSTR DFMGGFS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1495751e-137AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047026.11e-115PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLU5GE235e-91U5GE23_POPTR; Uncharacterized protein
STRINGPOPTR_0004s01080.18e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-25AGAMOUS-like 61