PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23834.1 Da PI: 7.9984 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.3e-39 | 15 | 116 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCa+dC++apyf++eq +++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++ CCG002228.1 15 PCGACKFLRRKCASDCIFAPYFCSEQgTARFAAIHKVFGASNVSKLLLHVPVADRYEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQV 112 7*************************89********************************************************************99 PP DUF260 98 keel 101 k++l CCG002228.1 113 KAQL 116 9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.999 | 14 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-38 | 15 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MASSVTGTGT GTGSPCGACK FLRRKCASDC IFAPYFCSEQ GTARFAAIHK VFGASNVSKL 60 LLHVPVADRY EAVVTIAYEA QARIRDPVYG CVAHIFSLQQ QVACLQAQLM QVKAQLAQNL 120 IDSTRINIEK THHQWQGNNI SGVSSFPSYQ TYINPISPQS SLDSVDLNNS NIDHGMMDMQ 180 DIKSGEEFAF QSCSKVKRPY NSDLGELQAL ALRMMRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-36 | 8 | 116 | 4 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-36 | 8 | 116 | 4 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208375 | 1e-109 | AC208375.1 Populus trichocarpa clone JGIACSB249-H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028776.1 | 1e-164 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 4e-77 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | B9GS35 | 1e-155 | B9GS35_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04210.1 | 1e-156 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4509 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 1e-60 | lateral organ boundaries-domain 16 |