PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002082.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 322aa    MW: 36726.2 Da    PI: 7.6157
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002082.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.4e-191966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv++++++G g+W++ a++ g++Rt+k+c++rw++yl
      CCG002082.1 19 RGPWTLEEDTLLVHYIARHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 66
                     89********************************************97 PP
2Myb_DNA-binding53.26.7e-1772115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
      CCG002082.1  72 RGNLTPQEQLLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 115
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.3091470IPR017930Myb domain
SuperFamilySSF466897.34E-3117113IPR009057Homeodomain-like
SMARTSM007175.9E-161868IPR001005SANT/Myb domain
PfamPF002491.2E-171966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-232073IPR009057Homeodomain-like
CDDcd001671.34E-122166No hitNo description
PROSITE patternPS0017503443IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
SMARTSM007174.7E-1571119IPR001005SANT/Myb domain
PROSITE profilePS5129420.64671121IPR017930Myb domain
PfamPF002491.7E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2374120IPR009057Homeodomain-like
CDDcd001678.93E-1276115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSSSKKTTSS KEDDAELRRG PWTLEEDTLL VHYIARHGEG RWNLLAKRAG LRRTGKSCRL  60
RWLNYLKPDV KRGNLTPQEQ LLILDLHSKW GNRWSKIAQH LPGRTDNEIK NYWRTRVQKQ  120
ARHLRIDANS TAFQDIIRRS WMPRLLQKIG GSSTFSSAMT CQSPAVSQLI PNYAPQLSAF  180
PTALPPPQQQ EAPLDMSVVM HCMEHREQTS DSEHGTSSCI SSAESMNVSQ MSHLSEYPKS  240
PYQAMGNNGD YSTLVKDCYY VDSNFYDMEA INFATMSVPG ELGISAVDRH MGDGDWAGYD  300
YGDTVWNMDE LWQFRNLQGK EN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25161201104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045847.10.0PREDICTED: myb-related protein Zm38-like
TrEMBLB9I2L10.0B9I2L1_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.19e-80myb domain protein 62