PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000814.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 622aa MW: 68266.4 Da PI: 9.3339

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000814.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H CCG000814.1 84 FICEVCNKGFQREQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	13	0.0003	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ CCG000814.1 160 WKCEKCSKRYAVQSDWKAHSKTC 182 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.52E-7	83	106	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.0E-6	83	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	3.1E-5	84	106	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	84	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	125	155	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.3E-5	148	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.52E-7	155	180	No hit	No description
SMART	SM00355	130	160	180	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MAASSSVPFF GIREEDQNQM KQQHSSTPTS SSARAPPPPK KKRNQPGTPS KYHQFYLKID 60 LPITNPDAEV IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV 120 RRKVYLCPEP TCVHHDPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKRYA VQSDWKAHSK 180 TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARNPP TNLNTIGSHL YGSSNMTLGL 240 SQVGTQISSL QDHSNQSTDV LRFGGGVRTG QFDHLLPPSI GSSSFRPPQQ MPSPAFFMQE 300 TSQNYHDENQ SQQELLQNKP FHHGLMQFAE IHNTTSNPPS AGNLFNLSFL SNSSTTNSNN 360 ANNSNSNLPT SGLLISDHFN NQNGVGSGSE ETNNFSNNVR GNQMTSGVPS LFSSSVQNDN 420 MVSHMSATAL LQKAAQMGST SSNNSASLLR SFASSSSSGT KSDRALVGGN FGGMLSDNEN 480 NLHELMNSFA PGNPSIFGSG HAQENPYGGY TANRTSLEQE KQHHVPNFGN INMDEAKLHQ 540 GLNASNIGGS DRLTRDFLGV GPQKVRSMSG SSGFSQREKQ QQLQHQHHGM DMGDSSLDLE 600 RHNTSISAAP TSQSFGGNGS FQ

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MAASSSVPFF GIREEDQNQM KQQHSSTPTS SSARAPPPPK KKRNQPGTPS KYHQFYLKID  60
LPITNPDAEV IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV  120
RRKVYLCPEP TCVHHDPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKRYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARNPP TNLNTIGSHL YGSSNMTLGL  240
SQVGTQISSL QDHSNQSTDV LRFGGGVRTG QFDHLLPPSI GSSSFRPPQQ MPSPAFFMQE  300
TSQNYHDENQ SQQELLQNKP FHHGLMQFAE IHNTTSNPPS AGNLFNLSFL SNSSTTNSNN  360
ANNSNSNLPT SGLLISDHFN NQNGVGSGSE ETNNFSNNVR GNQMTSGVPS LFSSSVQNDN  420
MVSHMSATAL LQKAAQMGST SSNNSASLLR SFASSSSSGT KSDRALVGGN FGGMLSDNEN  480
NLHELMNSFA PGNPSIFGSG HAQENPYGGY TANRTSLEQE KQHHVPNFGN INMDEAKLHQ  540
GLNASNIGGS DRLTRDFLGV GPQKVRSMSG SSGFSQREKQ QQLQHQHHGM DMGDSSLDLE  600
RHNTSISAAP TSQSFGGNGS FQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	156	217	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-34	156	217	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208494	0.0	AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025044.1	0.0	PREDICTED: zinc finger protein MAGPIE-like
Refseq	XP_011025053.1	0.0	PREDICTED: zinc finger protein MAGPIE-like
Refseq	XP_011025063.1	0.0	PREDICTED: zinc finger protein MAGPIE-like
Refseq	XP_011025071.1	0.0	PREDICTED: zinc finger protein MAGPIE-like
Refseq	XP_011025077.1	0.0	PREDICTED: zinc finger protein MAGPIE-like
Swissprot	Q9ZUL3	1e-147	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2K1ZH36	0.0	A0A2K1ZH36_POPTR; Uncharacterized protein
STRING	POPTR_0008s14180.4	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-134	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]