PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g06210
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 225aa    MW: 26848.3 Da    PI: 9.7524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g06210genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.31.7e-2431282128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                   GfrFhPtdeel+ +yLk+ v +  l+  ++ik + +  ++ePw++    ++++k  yf s+ ++ +++ k+ +r++++g+Wk + + +++ +   k+
  CA12g06210   3 SLGFRFHPTDEELI-NYLKNFVLHGVLPPRDFIKVAdQFEDLEPWEIM---TGSKKTRYFLSRLKRLKNSTKKFSRTVRKGTWKGQNSGNRIEDGlqKN 97 
                 57************.9**********999999**99456778*****5...4567788*****999999999**************9999999877688 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++g k++L + + ++++ ++ +W+m+ey l
  CA12g06210  98 TTIGYKRSLKYKSDNEKDENNNKWLMKEYFL 128
                 88**********9999999**********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.3562150IPR003441NAC domain
SuperFamilySSF1019417.32E-242149IPR003441NAC domain
PfamPF023655.2E-185127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLSLGFRFHP TDEELINYLK NFVLHGVLPP RDFIKVADQF EDLEPWEIMT GSKKTRYFLS  60
RLKRLKNSTK KFSRTVRKGT WKGQNSGNRI EDGLQKNTTI GYKRSLKYKS DNEKDENNNK  120
WLMKEYFLRD EYFRKSNKNY AFVICKIKEK RKNEKKNKGV TNDEVMEEEA DEFIDYVLER  180
IPDNHQVITN HDDNRFAVAN EVNYEEIKRM DERSKSPHNT MQTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15262KKTRYFLSRLK
26177LKRLKNSTKKFSRTVRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549495.11e-125PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A2G2Y5Z31e-164A0A2G2Y5Z3_CAPAN; Uncharacterized protein
STRINGXP_009761286.12e-55(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-16NAC domain containing protein 2