PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g03830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 406aa    MW: 44065.9 Da    PI: 8.9434
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g03830genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.8e-112044327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++ C+++ rtG C++G++C+F+H+p
  CA12g03830 20 EPDCSYYIRTGLCRFGSTCRFNHPP 44
                689********************97 PP

2zf-CCCH39.41e-126589327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                +++C+++++tGtCk+G++CkF+H++
  CA12g03830 65 QPECQYYLKTGTCKFGATCKFHHPK 89
                799********************96 PP

3zf-CCCH37.93e-12112135427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  +C +++rtG+Ck+G++CkF+H++
  CA12g03830 112 TECAYYMRTGQCKFGSTCKFHHPQ 135
                 58********************97 PP

4zf-CCCH382.7e-12264290127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+++tG Ck+G+ C+F+H++
  CA12g03830 264 PGQPECQFYMKTGDCKFGAVCRFHHPR 290
                 5789*********************96 PP

5zf-CCCH40.35.3e-13310336127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++lC f++r+G+Ck+G++CkF H++
  CA12g03830 310 PGEPLCIFYSRYGICKFGPSCKFDHPM 336
                 589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6151745IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-51744IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-82044IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-52245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-42343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3946290IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-56289IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-106589IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-66691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-56888IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577108136IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6109136IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4114134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596263291IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6263290IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-9265290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5267292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-5269291IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7309336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037309337IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5312336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4314334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MNLRSGESIE SGHYPVRESE PDCSYYIRTG LCRFGSTCRF NHPPNRKLAI ATARMKGEYP  60
ERAGQPECQY YLKTGTCKFG ATCKFHHPKD KAGIAGRVTL NVLGYPLRAN ETECAYYMRT  120
GQCKFGSTCK FHHPQPSNMM VSLRGSPVYP TVPSATTPGQ LSYPLSRGSF IPGARWQGPS  180
GYTPLIVPQG VVSVPGFAYG GQMGSVSSPE GQQQAAGNNQ VYGTSRSGDP ATMGSQGVTS  240
PYRQASTPMG YYALQGENVF PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERMIPPPDCL  300
LSPIGLPLRP GEPLCIFYSR YGICKFGPSC KFDHPMTVFT YSISGSSSTT DAPTVQRLLG  360
SSSGTSALNL TSEGLVEAVS TKPRRLSLTE TRKMPSGDNN IDREG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550988.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U8EV010.0A0A1U8EV01_CAPAN; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A2G2Y5D60.0A0A2G2Y5D6_CAPAN; zinc finger CCCH domain-containing protein ZFN-like
STRINGPGSC0003DMT4000418440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-169zinc finger protein 1