PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g03830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 44065.9 Da PI: 8.9434 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.8e-11 | 20 | 44 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H+p CA12g03830 20 EPDCSYYIRTGLCRFGSTCRFNHPP 44 689********************97 PP | |||||||
2 | zf-CCCH | 39.4 | 1e-12 | 65 | 89 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ CA12g03830 65 QPECQYYLKTGTCKFGATCKFHHPK 89 799********************96 PP | |||||||
3 | zf-CCCH | 37.9 | 3e-12 | 112 | 135 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ CA12g03830 112 TECAYYMRTGQCKFGSTCKFHHPQ 135 58********************97 PP | |||||||
4 | zf-CCCH | 38 | 2.7e-12 | 264 | 290 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ CA12g03830 264 PGQPECQFYMKTGDCKFGAVCRFHHPR 290 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.3 | 5.3e-13 | 310 | 336 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ CA12g03830 310 PGEPLCIFYSRYGICKFGPSCKFDHPM 336 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.615 | 17 | 45 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-5 | 17 | 44 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-8 | 20 | 44 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 22 | 45 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 23 | 43 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.394 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-10 | 65 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 66 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-5 | 68 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.577 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-5 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-6 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-10 | 112 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 114 | 134 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-9 | 265 | 290 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-5 | 267 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-5 | 269 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 312 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 314 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MNLRSGESIE SGHYPVRESE PDCSYYIRTG LCRFGSTCRF NHPPNRKLAI ATARMKGEYP 60 ERAGQPECQY YLKTGTCKFG ATCKFHHPKD KAGIAGRVTL NVLGYPLRAN ETECAYYMRT 120 GQCKFGSTCK FHHPQPSNMM VSLRGSPVYP TVPSATTPGQ LSYPLSRGSF IPGARWQGPS 180 GYTPLIVPQG VVSVPGFAYG GQMGSVSSPE GQQQAAGNNQ VYGTSRSGDP ATMGSQGVTS 240 PYRQASTPMG YYALQGENVF PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERMIPPPDCL 300 LSPIGLPLRP GEPLCIFYSR YGICKFGPSC KFDHPMTVFT YSISGSSSTT DAPTVQRLLG 360 SSSGTSALNL TSEGLVEAVS TKPRRLSLTE TRKMPSGDNN IDREG* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014160 | 0.0 | BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016550988.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1U8EV01 | 0.0 | A0A1U8EV01_CAPAN; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | A0A2G2Y5D6 | 0.0 | A0A2G2Y5D6_CAPAN; zinc finger CCCH domain-containing protein ZFN-like | ||||
STRING | PGSC0003DMT400041844 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-169 | zinc finger protein 1 |