PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g14070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 441aa MW: 49201.3 Da PI: 7.7013 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.3e-17 | 103 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g CA11g14070 103 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 152 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.4 | 3.7e-13 | 195 | 245 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g CA11g14070 195 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 245 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.17E-16 | 103 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-9 | 103 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 104 | 160 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-11 | 104 | 162 | No hit | No description |
SMART | SM00380 | 1.3E-32 | 104 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-17 | 104 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-17 | 195 | 254 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.86E-26 | 195 | 255 | No hit | No description |
Pfam | PF00847 | 1.1E-8 | 195 | 245 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.725 | 196 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-32 | 196 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-16 | 196 | 253 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-6 | 197 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-6 | 235 | 255 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MMLDLNLSAI YDEKIPEVGH GGDERNRSCC NNDDDHHHPS EYVTQQLFPV NTAELNTRAH 60 TSQNADWIDR STYDPANTVG FREMPKQQQP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH 120 IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEGMKQ MSNLSKEEFV 180 HVLRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARAYDKAA 240 IKCNGRDAVT NFEPSAYEGE PNSNPQIEGS QQDLDLNLGI ATSSPKEIER SSVFQYHPYD 300 MQESTKSQMD KSGSQTVGSS HFKGLPAVTS EQAHLWNGVY SNFFPSYEER ASGKRIDVGT 360 SHGHPNWAMQ MHGQVGTTSM SMFSAAASSG FSTPATTASA SVMSGPNNLN NLNLSFASYS 420 TPSTNTTQYY YQIRPPLPPP * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ586953 | 0.0 | HQ586953.1 Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016548531.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Swissprot | B8AXC3 | 1e-102 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A2G2YGH3 | 0.0 | A0A2G2YGH3_CAPAN; Ethylene-responsive transcription factor RAP2-7 | ||||
STRING | PGSC0003DMT400065313 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-105 | related to AP2.7 |