PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g10980

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bZIP

Protein Properties

Length: 352aa MW: 38999.9 Da PI: 8.8764

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g10980	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2e-11	273	324	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkke 55 +r +r++kNRe+A rsR RK+a++ eLe +v++L++ ++L+k+ +e ++k+ CA11g10980 273 RRRKRMIKNRESAARSRDRKQAYTLELEAEVAKLKEIKQQLQKNqAEFIEKQ 324 689**************************************87513334444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.1E-12	269	328	No hit	No description
SMART	SM00338	2.5E-11	269	330	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.048	271	315	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.07E-22	273	327	No hit	No description
Pfam	PF00170	1.6E-9	273	331	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.92E-9	273	320	No hit	No description
PROSITE pattern	PS00036	0	276	291	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGSYLNFKNF ADASQPESSG TNNFSLARQS TIYSFTFDEL QSTCGLGKDF GSMNMDDFLK 60 NIEGENLQRQ GSLTLPRTLS QKTIDEVWKD FQKESVNAND VSETGGSNFG QRESTLGEMT 120 LEEFLVRAGA VREDMQPTGY SNDVTLTTTS GFIQPSSNVT IKFLQATQNP GHQIAGTNIF 180 NVVSTTSLPQ QPLFPKQTTV EFASPMQLGT RAPMPNPSAN TNSIMQGGVM SMPVKGVSPG 240 NLDTSSLSLS PYACGEGGRG RRSCTSIEKV VERRRKRMIK NRESAARSRD RKQAYTLELE 300 AEVAKLKEIK QQLQKNQAEF IEKQKNQLLE KMNMPWENKL ICLRRTVTGP W*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGSYLNFKNF ADASQPESSG TNNFSLARQS TIYSFTFDEL QSTCGLGKDF GSMNMDDFLK  60
NIEGENLQRQ GSLTLPRTLS QKTIDEVWKD FQKESVNAND VSETGGSNFG QRESTLGEMT  120
LEEFLVRAGA VREDMQPTGY SNDVTLTTTS GFIQPSSNVT IKFLQATQNP GHQIAGTNIF  180
NVVSTTSLPQ QPLFPKQTTV EFASPMQLGT RAPMPNPSAN TNSIMQGGVM SMPVKGVSPG  240
NLDTSSLSLS PYACGEGGRG RRSCTSIEKV VERRRKRMIK NRESAARSRD RKQAYTLELE  300
AEVAKLKEIK QQLQKNQAEF IEKQKNQLLE KMNMPWENKL ICLRRTVTGP W*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB675692	0.0	AB675692.1 Solanum lycopersicum SlABF4 mRNA for ABA responsive transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016556959.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
Refseq	XP_016556960.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
Refseq	XP_016556961.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
Refseq	XP_016556962.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
Swissprot	Q9M7Q5	1e-80	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A2G2YFD3	0.0	A0A2G2YFD3_CAPAN; BZIP transcription factor
STRING	PGSC0003DMT400059040	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	1e-75	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]