PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g06410
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 483aa    MW: 53112.9 Da    PI: 6.2479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g06410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13296341454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr+++P+      +K++Ka+ L  Av YI++L
  CA10g06410 296 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVAYINEL 341
                 799***********************8.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.0E-5331212IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.88E-14290345No hitNo description
PROSITE profilePS5088816.952292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-18293358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17296354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-16298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDELIVSSSS SSSSFFIPSL LSQGNQTSST LQQMLQHILK IQTDSWAYAI FWQTSNDDDG  60
RLFLAWGDGH FHVTKVKKGG VVCANKASSV ERKNVIKGLQ ALICENGDNN GVVEGDGDGD  120
VTDAEWFYVM SLAQSFSIGD GVPGKAFSSG SLVWLNGAQQ LEFSNCERAK EAHVHGIETL  180
VCIPTSTGVL ELGSSELIKE NWNLVQQVKT LFNSNQENVN CPIDEKSISL VDIGLQENYN  240
NNTSRKAKAA GETTTIFQDS DQSDSDCQVL MEKPIEKKTP KKRGRKPGAS RETPLNHVEA  300
ERQRREKLNH RFYALRSVVP HVTKMDKASL LSDAVAYINE LKSKVDELKV QLSTKPKKMK  360
IESMDSTNLD NHSTTTTTTS VNQIRPNSSS VASFGIPNNL KVEVEVKILG PDAMIRVQSE  420
NVNYPSARLM RALQDLELHV HHASISSVND LMLQDIVVKV PIGLGTEDGL KIALLRSLEQ  480
QQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-41302158195Transcription factor MYC3
4rqw_B1e-41302158195Transcription factor MYC3
4rs9_A1e-41302158195Transcription factor MYC3
4yz6_A1e-41302158195Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545788.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A2G2YJX40.0A0A2G2YJX4_CAPAN; Transcription factor MYC2
STRINGXP_009604694.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-81bHLH family protein