PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g06160

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 382aa MW: 42962.1 Da PI: 6.886

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g06160	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.6e-31	219	277	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+++ C ++k+ver+++dp+++++tY+ eHnh+ CA10g06160 219 SDMWSWRKYGQKPIKGSPYPRGYYKCSTSkACLARKQVERNRSDPNMFIVTYTAEHNHP 277 79**********************99889*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-30	208	279	IPR003657	WRKY domain
PROSITE profile	PS50811	34.532	213	279	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-26	216	279	IPR003657	WRKY domain
SMART	SM00774	1.4E-35	218	278	IPR003657	WRKY domain
Pfam	PF03106	2.9E-25	220	277	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MEEDWDLHAV VRSCTPANTA STTTNDCDLV HGILKVDGAL MKSLRIEKDY RQFDNDQMTL 60 QRGSTTTSCN PTNNIHYLCS FQPRPNDNNN NSLFCFKDLL EQRILTTNSA TDFEESHELC 120 KPFFTASESL TISSPRRGLP ISPISVLGRL QDLPPSSQQQ QQQHLHQLTN TKPIQPKRPL 180 SSLNGSITNC TLHAQSSRTK RRKNQLKKVC QVAADALSSD MWSWRKYGQK PIKGSPYPRG 240 YYKCSTSKAC LARKQVERNR SDPNMFIVTY TAEHNHPMPT HRNSLAGISR HKTANPNKPT 300 SLSPATNSPA PENQESSRDD KEDIFEDDDD EFGKTEPDDD FFDGLDELVI QATGDSLPEK 360 FSGTLQFPWL VNNAAXXXWL T*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MEEDWDLHAV VRSCTPANTA STTTNDCDLV HGILKVDGAL MKSLRIEKDY RQFDNDQMTL  60
QRGSTTTSCN PTNNIHYLCS FQPRPNDNNN NSLFCFKDLL EQRILTTNSA TDFEESHELC  120
KPFFTASESL TISSPRRGLP ISPISVLGRL QDLPPSSQQQ QQQHLHQLTN TKPIQPKRPL  180
SSLNGSITNC TLHAQSSRTK RRKNQLKKVC QVAADALSSD MWSWRKYGQK PIKGSPYPRG  240
YYKCSTSKAC LARKQVERNR SDPNMFIVTY TAEHNHPMPT HRNSLAGISR HKTANPNKPT  300
SLSPATNSPA PENQESSRDD KEDIFEDDDD EFGKTEPDDD FFDGLDELVI QATGDSLPEK  360
FSGTLQFPWL VNNAAXXXWL T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	203	280	2	80	Disease resistance protein RRS1
5w3x_D	1e-20	203	280	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	6e-82	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016545773.1	0.0	PREDICTED: WRKY transcription factor 22-like
Swissprot	O04609	7e-66	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	A0A2G2YK03	0.0	A0A2G2YK03_CAPAN; Putative WRKY transcription factor 29
STRING	XP_009758175.1	1e-115	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2591	24	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	3e-66	WRKY family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]