PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g17320

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 983aa MW: 111899 Da PI: 5.6244

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g17320	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.7	5.5e-10	901	927	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f+ r+G+Ck+G++CkF H++ CA09g17320 901 PGQPLCIFYCRYGICKFGSSCKFDHPM 927 589**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14798	5.01E-15	2	114	No hit	No description
SuperFamily	SSF52540	1.52E-60	135	392	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	4.9E-70	146	419	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	1.6E-10	155	276	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	8.8E-20	165	180	No hit	No description
PRINTS	PR00364	8.8E-20	233	247	No hit	No description
PRINTS	PR00364	8.8E-20	327	341	No hit	No description
SuperFamily	SSF52058	1.04E-23	511	710	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	4.2E-16	538	856	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	1.04E-23	738	858	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	8.8E-20	842	858	No hit	No description
PROSITE profile	PS50103	14.342	900	928	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-4	900	927	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-7	902	927	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	903	927	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MAYAAITCLM RTIHQSMELT ACDLQLFYEK LERLRAILEK PWKATADVEA LTSLEAEITE 60 LAYSAEDMSD LESSKVFLAQ NVEERSRSMW ELFFLLEQAL ECIDSTMKQW MATSYSMKDL 120 KVQPYSLAGL SEHAVERPQN MMVGYETEFE MMLDQLTRGE RELEVVSIVG MGGIGKTTLA 180 TKLYSHPHIM SHFDILAKAT VSQEHCVRNI LLALLSTTSA EPDDELRDRL QKLLKRKRYL 240 VVIDDIWTTE AWDDIKLCFP DCNNGSRIIL TTRNVEVTEY ANSGKPPYHM RLMNFDESWS 300 LLYEKVFAKD SFPHEFVQLG KQIAFKCGGL PLSIVVIGGL LSKIGKSLGD WQIVASNVSS 360 TVSTDVDVQC MKVLALSYHY LPSHLKPCFL YFAIFSEDQL IFVDKVVQLW VAEGFLKVEE 420 MKCIEEVAET CLNQLIDRSL ISTCEYSRFG KIESCGMHDV TREFCLREAQ NMNFVNDLRG 480 KSEQNPCKQS MPCSSKSRGR ISIHNVEEYV RCHNSEAYSF ICFGRFQCRV TEFPFKLVRV 540 LHLAFRSCIT FPSEMLHLIH LRHLSLSLSS SFEQYREISP IIIDIPTSIS CLFYLQTFIL 600 NLSGVGLQYP IMLPLEILTM PQLRHLHLDW NYLRSHEPTE KSLVLKNLQC FSGLNPRYCT 660 GSFFRLFPNL KKLGVRGVPE DFSSCKDMYD FSMLDQIEEL EFLVNTQNYS CFLESTTPSG 720 SPPQYLLRSY PADDVPLLLL PPSDAFPQNL KSLALSGQFF LPWKDLSIVG KLPKLESLKL 780 SYNACKGVEW EVADEGFPRL KFLQLNYLGI RYWRANSDHF PCLERLFLYS CWNLDSIPHD 840 FVDITTLALI DISYCQESVG NSARQIQQDI QDNYGCSFEV HTRPVPPADC LLSPIGLPLR 900 PGQPLCIFYC RYGICKFGSS CKFDHPMTVQ PPLGSLLETS AFNSARNIQL DIQGCSVEVP 960 TRPVLPADCL LSPIGLPLRP VS*

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MAYAAITCLM RTIHQSMELT ACDLQLFYEK LERLRAILEK PWKATADVEA LTSLEAEITE  60
LAYSAEDMSD LESSKVFLAQ NVEERSRSMW ELFFLLEQAL ECIDSTMKQW MATSYSMKDL  120
KVQPYSLAGL SEHAVERPQN MMVGYETEFE MMLDQLTRGE RELEVVSIVG MGGIGKTTLA  180
TKLYSHPHIM SHFDILAKAT VSQEHCVRNI LLALLSTTSA EPDDELRDRL QKLLKRKRYL  240
VVIDDIWTTE AWDDIKLCFP DCNNGSRIIL TTRNVEVTEY ANSGKPPYHM RLMNFDESWS  300
LLYEKVFAKD SFPHEFVQLG KQIAFKCGGL PLSIVVIGGL LSKIGKSLGD WQIVASNVSS  360
TVSTDVDVQC MKVLALSYHY LPSHLKPCFL YFAIFSEDQL IFVDKVVQLW VAEGFLKVEE  420
MKCIEEVAET CLNQLIDRSL ISTCEYSRFG KIESCGMHDV TREFCLREAQ NMNFVNDLRG  480
KSEQNPCKQS MPCSSKSRGR ISIHNVEEYV RCHNSEAYSF ICFGRFQCRV TEFPFKLVRV  540
LHLAFRSCIT FPSEMLHLIH LRHLSLSLSS SFEQYREISP IIIDIPTSIS CLFYLQTFIL  600
NLSGVGLQYP IMLPLEILTM PQLRHLHLDW NYLRSHEPTE KSLVLKNLQC FSGLNPRYCT  660
GSFFRLFPNL KKLGVRGVPE DFSSCKDMYD FSMLDQIEEL EFLVNTQNYS CFLESTTPSG  720
SPPQYLLRSY PADDVPLLLL PPSDAFPQNL KSLALSGQFF LPWKDLSIVG KLPKLESLKL  780
SYNACKGVEW EVADEGFPRL KFLQLNYLGI RYWRANSDHF PCLERLFLYS CWNLDSIPHD  840
FVDITTLALI DISYCQESVG NSARQIQQDI QDNYGCSFEV HTRPVPPADC LLSPIGLPLR  900
PGQPLCIFYC RYGICKFGSS CKFDHPMTVQ PPLGSLLETS AFNSARNIQL DIQGCSVEVP  960
TRPVLPADCL LSPIGLPLRP VS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6s2p_N	2e-68	139	469	7	344	NRC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016540135.1	0.0	PREDICTED: putative late blight resistance protein homolog R1B-14 isoform X1
TrEMBL	A0A2G2YV77	0.0	A0A2G2YV77_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400020353	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	8e-20	zinc finger protein 1