PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA09g01740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 295aa MW: 32932.8 Da PI: 7.6679 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 113 | 135 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H CA09g01740 113 YQCKTCNRSFPSFQALGGHRASH 135 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00026 | 195 | 217 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H CA09g01740 195 HECSICGAEFNSGQALGGHMRRH 217 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 8.0E-13 | 112 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.45E-9 | 112 | 135 | No hit | No description |
SMART | SM00355 | 0.03 | 113 | 135 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.679 | 113 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 135 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.45E-9 | 190 | 217 | No hit | No description |
Pfam | PF13912 | 4.8E-13 | 194 | 218 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.577 | 195 | 217 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 195 | 217 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 197 | 217 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MIKMEAHQEN DHQLNMVIKR RRTKRPRPPS PLTLAITTSS CSTVEGASGG ELVDGHVANS 60 LSCVSKCTGW MDDQIVRNTN QEEEDMANCL ILLAQGHNFQ KSSAQSPMTL DVYQCKTCNR 120 SFPSFQALGG HRASHKKPKT LDDQVRNLKS IDHQVLVDNR SKLNDEDHVT TLSLQIPNSN 180 TITTTSTNKN KNRVHECSIC GAEFNSGQAL GGHMRRHRPL PNSIAITSNP NHTEESHHHH 240 HHDQQIKNTR TFLSLDLNLP APEDDHRPEN SKFTFASKEQ VIVFSASPLV DCHY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 23 | 27 | KRPRP |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554089.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2G2YPU9 | 0.0 | A0A2G2YPU9_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400009871 | 1e-142 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1262 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03510.1 | 6e-50 | C2H2 family protein |