PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA08g08890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 184aa MW: 20899.8 Da PI: 9.5795 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.3 | 7.3e-17 | 45 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ CA08g08890 45 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsaraNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 129 5*************************************87777777888999******************99984.....57****9996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.9E-20 | 43 | 129 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MDKQAGNHHH QNHEISNKDD YSPKIKPQNY QVATGNNSDR LKRDEWSEGA VSCLLEAYEA 60 KWILRNRAKL KGQDWEDVAK HVSARANSTK SPKTQTQCKN KIESMKKRYR SESATAADAS 120 SWPLYPRLDL LLRGNNASAA SFSLIPXXXX XXXXXXXXXX XXXXXXXXXX XXAAADGFAY 180 WEW* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC238911 | 1e-136 | AC238911.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-140o23 map 1, complete sequence. | |||
GenBank | AC239436 | 1e-136 | AC239436.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-309d12 map 1, complete sequence. | |||
GenBank | HG975513 | 1e-136 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557273.1 | 1e-104 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2G2YYF0 | 1e-108 | A0A2G2YYF0_CAPAN; Uncharacterized protein | ||||
STRING | Solyc01g096470.2.1 | 1e-84 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12251 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54390.1 | 9e-59 | sequence-specific DNA binding transcription factors |