PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g07730
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 374aa    MW: 41289.2 Da    PI: 6.2392
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g07730genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.1e-31189247259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
  CA08g07730 189 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 247
                 79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-31179249IPR003657WRKY domain
PROSITE profilePS5081135.026183249IPR003657WRKY domain
SuperFamilySSF1182901.01E-26186249IPR003657WRKY domain
SMARTSM007743.7E-37188248IPR003657WRKY domain
PfamPF031064.7E-26190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEEDWDLHAV VRGCTASSTT TTTSTTTTAT SCCSFQPRQD GNFFSFQDPF VPRFDNPTSD  60
FEELHNLYKP FFPKSQVQPQ QQVPRSPQNN IIPISPLSVL GGLQDLSAPQ PTLKQQQQQQ  120
QQQQQHIHQF FNSTRLTQPK QSLSVNGSTN STITASSSLG VSHTQSPRPK RRKNQLKKVC  180
QVPAEGLSSD MWSWRKYGQK PIKGSPYPRG YYRCSTSKGC LARKQVERNR SDPNMFIVTY  240
TAEHNHPMPT HRNSLAGSTR QKPANSEAGT TASDSNKPTS SSPVSSPACH STATEKQESS  300
REEKEDIFED EDEEFGSSNM GLDNMEPADD DFFEGLDELA AQATGDCFSD NFQGSMQLPW  360
LSNNATTTAA GGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-24173250280Disease resistance protein RRS1
5w3x_D8e-24173250280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538164.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1U8E3110.0A0A1U8E311_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YXT90.0A0A2G2YXT9_CAPAN; WRKY transcription factor 22-like
TrEMBLA0A2G3BT830.0A0A2G3BT83_CAPCH; Putative WRKY transcription factor 27
STRINGPGSC0003DMT4000002150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-66WRKY family protein