PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g16740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 29516.8 Da PI: 9.3756 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.5 | 3.2e-10 | 99 | 145 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++ + +++Lr l+P+ +K s ++ Le+ v+Y+k+L CA07g16740 99 RDVERQRRRDMAKLYQRLRLLIPSkY---LMGKRSISDHLEQIVDYVKDL 145 679*********************77...9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-10 | 92 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.903 | 93 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-7 | 97 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 99 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDDSEFDFGQ LDQLFNFLSS LPPPTPPPTT FQNQDSSISL QTQNSNHVPK KKPIVTNHHH 60 HHVIKKKPIK ISNINNDDQV QNPPKEKEKI AEKKKVIRRD VERQRRRDMA KLYQRLRLLI 120 PSKYLMGKRS ISDHLEQIVD YVKDLRKDIE DLERKRETLK QLKSTICSSQ LAPSSSSMKL 180 NEPLNDDDDD DRINVKSCNE GVEISIKGGL SLSNVLKVVM KEGFIVSSCV SSTVNQELIH 240 IIQTKVSCLI FSNYLNF* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 7e-90 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579520.1 | 1e-178 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | A0A1U8H853 | 1e-177 | A0A1U8H853_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2Z4V5 | 1e-177 | A0A2G2Z4V5_CAPAN; transcription factor bHLH118-like | ||||
STRING | Solyc07g062200.1.1 | 4e-97 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12831 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25400.1 | 1e-15 | bHLH family protein |