PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g07400
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 1063aa    MW: 117737 Da    PI: 6.6533
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g07400genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.25.6e-2271172199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+
  CA07g07400  71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQLL 166
                 99*****************************9545444.38************************************************..5688889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  CA07g07400 167 LGIRRA 172
                 ***997 PP
2Auxin_resp119.62.5e-39197280183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  CA07g07400 197 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 280
                 79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-4361200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-4162186IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-1870162No hitNo description
SMARTSM010193.4E-2271173IPR003340B3 DNA binding domain
PROSITE profilePS5086311.84371173IPR003340B3 DNA binding domain
PfamPF023627.6E-2071172IPR003340B3 DNA binding domain
PfamPF065071.3E-34197280IPR010525Auxin response factor
PROSITE profilePS5174526.8849521036IPR000270PB1 domain
SuperFamilySSF542778.5E-79701030No hitNo description
PfamPF023094.0E-69991037IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1063 aa     Download sequence    Send to blast
MKKDVDAQIP NYPNLPSKLV CLLHNVTLHA DPETDEVYAQ MTLQPVPSFD KEALLRSDLS  60
MKANKPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DYSMQPPAQE LVARDLHDNL  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR RANRQPTNLS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VIPLAKYYKA TYSSQVSLGM  240
RFRMMFETEE SGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESTAGE RRNRVSIWEI  300
EPVTAPFFIC PTPPFFRSKR PRLPGMPDDD CSDLDGMFKR TMPWLGDDFG MKDPQGLPGL  360
SLVQWMNMQQ NPSLANSMQP NYLHSLSGSV LQNVGSGADL SRQLGLPAPQ LPLQNTLQFG  420
SQRPTQQGQQ LDQLQKLPAT TLTPAGSIMQ SQQQLSDISQ QSRQSLINQS VPTNHVQAQL  480
LQVRSLVQSQ NVLQHQQSFQ NQLQRNLTQN LPQQQQIMNQ TQQQSFMPPQ PSDPLNQTLH  540
FSDSQLQMQL LQKLHQQQQS LLAQQSLLQQ PSQLGPIQDQ QKQLLDVSQN FSRSLATSQM  600
LDMPQTTSTS TSLSQPQIAQ QQVTTNNSQS NLCFAQPLKL QQQQQHQQQP GILPELSGQV  660
GQVLPPTTNQ LSANCSSLLT GAAGGGQSVV TDDIPSCSTS PSTNNCQNAV QPIMNGRIHR  720
GTVAADEANQ SSLPLLSSSG LEAISPNRNL VKDLQQKSDG KPSLNISKSQ NHGFLTPQTY  780
LNTAVPQMDY LDSSSSATSV CFSQNDVQLQ QTTNPMSFSS QPVVFRDSQD GEVQGDPRNN  840
VAFGANMDNQ LGISMMPDSL ITNSLVGSRK DVSNNISSGG GMLSSYENPK DAQPELSSSM  900
VSQSFGVPDM AFNSIDSTIN DGSFMNRGAW APPPQMPRMR TYTKLCTNFF ASMLSKVYKR  960
GAVGRSIDIT RYLGYEELKQ DLARRFGIEG QLEDRQRIGW KLVYVDHEND VLLVGDDPWE  1020
EFVNCVRCIK ILSPQEVQQM SLDGDFGNVQ NQACSSSDGG NV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-148230189388Auxin response factor 5
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1305440.0HM130544.1 Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580257.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A2G2Z2300.0A0A2G2Z230_CAPAN; Auxin response factor
STRINGSolyc07g016180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19